Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D17
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    29   0.69 
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    28   2.1  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   3.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.5  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    26   8.5  

>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 241 KRHKTSEQASALRHYSSHRYSDCMQHHNPLYERYAKHAEIPQ 366
           KRH  +   +  RHY S+   D ++      E Y++ +E+P+
Sbjct: 205 KRHVDNYNENRRRHYDSYSSYDELERRRSSNESYSRRSELPR 246


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 345 EACRNTTIP*AGVTLDTISAWAAMGWRT---EGRGWNVIGIHAGPANKL 482
           E+ R + IP  G+   ++  WA  GWR    E  G +  G  +GPA KL
Sbjct: 603 ESYRLSVIP-DGIPAMSVEVWATNGWRRYVHEAFGMHTFG-DSGPAPKL 649


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 693 QDDNYPRLKSLPAALLPDILSS*PDC 616
           QD++Y R+ +     LPDIL + P C
Sbjct: 306 QDESYCRICTQSCVTLPDILEAFPSC 331


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 350 MQKYHNSLGWGDIGYHFCVGGDGVAYRRPRVERHR-YSCWTSQ 475
           + K H+S+   + G+ + V GD +A     ++    Y+ WT++
Sbjct: 110 LSKRHDSIMVDEFGHEYIVEGDSIASADEAIDYDALYASWTAE 152


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 387 MSPQPKELWYFCMLRISLIQWVVVLHT 307
           MS QP   +Y   +R S+I W+V +HT
Sbjct: 164 MSAQP---YYVTEMRASVINWIVGVHT 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,974
Number of Sequences: 5004
Number of extensions: 68640
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)