Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D17
         (911 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.98 
SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)        31   1.3  
SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)            31   1.3  
SB_1957| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)            30   3.0  
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)                   28   9.1  

>SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 31.5 bits (68), Expect = 0.98
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 214 TRLLGRCSFKRHKTSEQASALRHYSSHRYSDCMQH-HNP 327
           T ++    + R+      + +RHY  HRY+ C QH H+P
Sbjct: 71  TNIIRHYYWHRYAHVNSTNIIRHYYWHRYAPCKQHQHHP 109



 Score = 27.1 bits (57), Expect(2) = 4.9
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +1

Query: 280 HYSSHRYSDCMQH-HNP 327
           HY  HRY+ C QH H+P
Sbjct: 241 HYYWHRYAQCKQHQHHP 257



 Score = 20.6 bits (41), Expect(2) = 4.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 268 SALRHYSSHRYS 303
           S +RHY  HRY+
Sbjct: 205 SIIRHYYWHRYA 216


>SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)
          Length = 477

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 233 VPSKDTRPLNKPVPYVIIHHTAIPTVCNTTTHCMRDMRSMQKYH 364
           +PS D +PL  PV  V+IH      V   TT C R+ R++  +H
Sbjct: 40  IPSYDKQPL--PVVPVLIHDLKAVYVRRFTTKCNRNTRTITTWH 81


>SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)
          Length = 252

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 274 LRHYSSHRYSDCMQHHN 324
           +RHY  HRY+ C QHH+
Sbjct: 39  IRHYYWHRYAPCKQHHH 55



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 274 LRHYSSHRYSDCMQHHN 324
           +RHY  HRY+ C QHH+
Sbjct: 123 IRHYYWHRYAPCKQHHH 139



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 274 LRHYSSHRYSDCMQH-HNP 327
           +RHY  HRY+ C QH H+P
Sbjct: 189 IRHYYWHRYAQCKQHQHHP 207


>SB_1957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 172 YRKRSSIRGFP-GLLTRLLGRCSFKRHKTSEQASALRHYSSHRYSDCMQH 318
           Y KRS+I         RLL      +H  SE   A+  Y+S +Y +C +H
Sbjct: 80  YNKRSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSSKYIECAKH 129


>SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)
          Length = 218

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 274 LRHYSSHRYSDCMQH-HNP 327
           +RHY  HRY+ C QH H+P
Sbjct: 74  IRHYYWHRYAQCKQHQHHP 92


>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 493 MPMLNLLAGPA*IPMTFHPRPSVRHP 416
           +P+L+L  GP  + +T  P P+V HP
Sbjct: 180 LPLLSLTRGPPLLSLTRGPAPTVTHP 205


>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
          Length = 237

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 550 VVANCSAGGVST-LQSPIRQMPMLNLLAGPA*IPMTFHPRPSVRHPIAAHAEMVSNVTPA 374
           + AN +   ++T L +P+  +P+   +A P+ +P T  P P+ + P    A   +  TPA
Sbjct: 25  ITANAALNPLNTSLTAPV--VPLPTPVAPPSTVPYTATPAPAQQAPHTTAASQPAPYTPA 82

Query: 373 *G 368
            G
Sbjct: 83  SG 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,032,790
Number of Sequences: 59808
Number of extensions: 575251
Number of successful extensions: 1482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)