Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D17
         (911 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52250.1 68416.m05742 myb family transcription factor contain...    31   1.4  
At4g37120.1 68417.m05257 expressed protein                             29   3.2  
At3g57590.1 68416.m06415 F-box family protein contains F-box dom...    29   5.7  

>At3g52250.1 68416.m05742 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 227 GAVPSKDTRPLNKP-VPYVIIHHTAIPTVCNTTTHCMRDMRSMQKYHNSLGWGD 385
           GAV S D +    P +  V    +   T C TTTH   +M S +K    LGWG+
Sbjct: 344 GAVDSSDRKIEVLPKIVTVTQSSSGDATACATTTHLSEEMSSRKK--QRLGWGE 395


>At4g37120.1 68417.m05257 expressed protein
          Length = 536

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 459 EYL*RSTRGLRYATPSPPTQKWYPMSPQPKELWY 358
           EY+ ++   L+   PS   QK + + P+PK++WY
Sbjct: 46  EYMSKAPWYLKSEQPSLKHQKNWKIEPEPKKIWY 79


>At3g57590.1 68416.m06415 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 404

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +2

Query: 272 PYVIIHHTAIPTVCNTTTHCMRDMRSMQKYHNS---LGWGDIGYHFCVGGDGVAYRRPRV 442
           P + +   A P +CN TT     +  + +Y N+   LG+  IG  F V  +   +   R 
Sbjct: 107 PDLWLSKDASPVICNPTTGMYESLPDLMRYKNARGFLGFDPIGKQFKVLSEAYPFSDQR- 165

Query: 443 ERH 451
           E H
Sbjct: 166 EHH 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,222,371
Number of Sequences: 28952
Number of extensions: 384648
Number of successful extensions: 1072
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)