Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D16
         (881 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    54   5e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    44   0.004
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    43   0.012
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    39   0.15 
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    39   0.19 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    39   0.19 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    36   1.0  
UniRef50_Q2C3D2 Cluster: Chitinase, containing dual catalytic do...    35   2.4  
UniRef50_Q14M86 Cluster: Putative uncharacterized protein; n=1; ...    33   9.6  
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    33   9.6  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 54.0 bits (124), Expect = 5e-06
 Identities = 31/57 (54%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 655 CINESATARGEAVCVLGALPLPRSLTRCXRSFGCGXRYXXXXRG-*YGYPXNXGIPQ 822
           CI + ATAR EAV VL ALPL RS TRC RS GCG        G  YG P   G+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +1

Query: 679 RGEAVCVLGALPLPRSLTRCXRSFGCGXRY 768
           R   +C  G +PLPRSLTR  RSFGCG RY
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERY 55


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.7 bits (96), Expect = 0.012
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +2

Query: 458 DPDMIRYIDEFGQTTTXMQ 514
           DPDMIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 39.1 bits (87), Expect = 0.15
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +2

Query: 587 QVNNXNCIHFMFQVQGEVWEVFSALMNRPPRGERRFAYW 703
           ++ + NC+    +       V +ALMNRP RGERRFAYW
Sbjct: 3   ELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 38.7 bits (86), Expect = 0.19
 Identities = 19/38 (50%), Positives = 19/38 (50%)
 Frame = -3

Query: 855 PFXGLLXTCXFLXYPXIXGITVLPPXXXXIPXXAXERP 742
           P    L TC F  YP I  ITVLPP     P  A ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 38.7 bits (86), Expect = 0.19
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -1

Query: 725 ERGSGRAPNTQTASPRAVADSLMQ 654
           +R +  APNTQTASPRA+ADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 36.3 bits (80), Expect = 1.0
 Identities = 19/30 (63%), Positives = 19/30 (63%)
 Frame = +3

Query: 744 VVRXRXXVSXXSKGVIRLSPXSGDTXGXNM 833
           VVR R  VS  SK VIRLS  SGD  G NM
Sbjct: 30  VVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_Q2C3D2 Cluster: Chitinase, containing dual catalytic
           domains; n=3; Vibrionaceae|Rep: Chitinase, containing
           dual catalytic domains - Photobacterium sp. SKA34
          Length = 399

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 106 MKFTVAFALIAMFAIVAVNSQENGGDSPDGEVAPGVDPVKVVD 234
           MK+T+  ALIA  ++ A NS  N  D   G VA    P K+ +
Sbjct: 1   MKYTLLAALIAATSLTACNSSSNSSDDYSGYVAQEPKPAKITE 43


>UniRef50_Q14M86 Cluster: Putative uncharacterized protein; n=1;
           Spiroplasma citri|Rep: Putative uncharacterized protein
           - Spiroplasma citri
          Length = 326

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 634 PLNLKHKMNAIVVVNLFIAAYNGYK*S-NSITNFTNKAFFSLHXSCGLSKLINVSYHVWI 458
           P+NL H  +  V  N+ I  Y+GY  +  SI   T     +L  +  +SK  N+ Y+ ++
Sbjct: 138 PVNLPHLSDFKVNDNIIIGQYHGYNFNFGSINQATTTVVDNLQPNL-ISKPYNLQYYCYL 196

Query: 457 QLTLT 443
            LT+T
Sbjct: 197 FLTIT 201


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.1 bits (72), Expect = 9.6
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 536 EICDAIALFVTIISCNKQVNNXNCIHFMFQVQGEVWEVFSALMNRPPRGERRFAYW 703
           +  DA   F+ I   N  +N+ +C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,682,963
Number of Sequences: 1657284
Number of extensions: 9860216
Number of successful extensions: 23976
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23954
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79112361923
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)