Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D15
         (1392 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P42768 Cluster: Wiskott-Aldrich syndrome protein; n=14;...    37   1.4  

>UniRef50_P42768 Cluster: Wiskott-Aldrich syndrome protein; n=14;
           Mammalia|Rep: Wiskott-Aldrich syndrome protein - Homo
           sapiens (Human)
          Length = 502

 Score = 36.7 bits (81), Expect = 1.4
 Identities = 27/74 (36%), Positives = 29/74 (39%)
 Frame = -3

Query: 232 PXXGGXYXXRPPLXTVXGXRPXXXPYSXVXXXPXGXXPPXPPLPXGXX*IPXTLXXGGPP 53
           P  GG    RPP+  V G +    P   V   P G  PP PP P G    P     GGPP
Sbjct: 319 PSRGGNQLPRPPI--VGGNKGRSGPLPPV---PLGIAPP-PPTPRG----PPPPGRGGPP 368

Query: 52  PYXTXXXGXGGXXP 11
           P      G  G  P
Sbjct: 369 PPPPPATGRSGPLP 382


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.310    0.133    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,905,991
Number of Sequences: 1657284
Number of extensions: 7495966
Number of successful extensions: 8998
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8404
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 145777233240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)