Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D15
         (1392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    30   3.8  
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797     29   6.6  

>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = -3

Query: 181 GXRPXXXPYSXVXXXPXGXXPPXPPLPXGXX*IPXTLXXGGPPPYXTXXXGXGG 20
           G  P   PYS       G  PP      G   +P     G PPPY     G GG
Sbjct: 355 GAPPPNPPYSGGAPGGQGSLPPSYDGGYGGRPMPGGGGPGAPPPYHGGGGGGGG 408


>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
          Length = 216

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/51 (27%), Positives = 16/51 (31%)
 Frame = -2

Query: 203 PSPXHCXRXAPXXGXXFXGXXXPXGXXPPXSXXPXGPTXNPXYPXXGGSPP 51
           P P +C    P           P    P  S     P  NP  P   G+PP
Sbjct: 51  PPPPYCVYPPPPTKPALPAPLPPTPASPGDSPPSIAPAGNPPTPAQAGAPP 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.133    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,145,781
Number of Sequences: 37544
Number of extensions: 303857
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4385596824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)