Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D15
         (1392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.2  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       29   8.8  

>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 28/101 (27%), Positives = 32/101 (31%), Gaps = 5/101 (4%)
 Frame = +3

Query: 9   RGXXPPXPXXXVKXGGGPPXXRVXGIXXXPXGXGGXGGXXP-----XGXXXTXEXGSXXG 173
           +G  PP P    + GG PP     G    P G G  GG  P      G       G   G
Sbjct: 499 QGGGPPPPGAG-QGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWG 557

Query: 174 RXPXTVXRGGRXXXXPPQXGLWAXPXXXWXXXRPSAGGXXQ 296
           + P    +GG     PP  G    P        P   G  Q
Sbjct: 558 QPPPGAGQGG--GPPPPGAGQGGPPPPGAGQEGPPPPGAGQ 596


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 19/61 (31%), Positives = 20/61 (32%)
 Frame = -3

Query: 232  PXXGGXYXXRPPLXTVXGXRPXXXPYSXVXXXPXGXXPPXPPLPXGXX*IPXTLXXGGPP 53
            P  GG    +PP        P   P       P G  PP PP P G    P       PP
Sbjct: 935  PPPGGSAPSQPP-PPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPP 993

Query: 52   P 50
            P
Sbjct: 994  P 994


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 18/64 (28%), Positives = 22/64 (34%)
 Frame = -3

Query: 202 PPLXTVXGXRPXXXPYSXVXXXPXGXXPPXPPLPXGXX*IPXTLXXGGPPPYXTXXXGXG 23
           PP+ T     P   P   +   P G  PP   +P      P  +   G PP      G G
Sbjct: 215 PPIQTSTSLPPMIPPVGMLGHPPMGAPPPPHSMPPPGMPPPGMMPPPGFPP--MGMPGMG 272

Query: 22  GXXP 11
           G  P
Sbjct: 273 GMPP 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.133    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,698,522
Number of Sequences: 59808
Number of extensions: 211826
Number of successful extensions: 277
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4436879706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)