Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D15
         (1392 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    34   0.25 
At5g04970.1 68418.m00526 pectinesterase, putative contains simil...    29   5.5  
At1g61080.1 68414.m06877 proline-rich family protein                   29   9.6  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 20/52 (38%), Positives = 22/52 (42%)
 Frame = -3

Query: 205 RPPLXTVXGXRPXXXPYSXVXXXPXGXXPPXPPLPXGXX*IPXTLXXGGPPP 50
           RPP  +  G +    P S     P G  PP PP P G    P     GGPPP
Sbjct: 653 RPPPRSAGGGKSTNLP-SARPPLPGGGPPPPPPPPGGG---PPPPPGGGPPP 700


>At5g04970.1 68418.m00526 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 624

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 17/61 (27%), Positives = 23/61 (37%)
 Frame = +1

Query: 538 PXAHPXXXESXXXGTXXPTXPAXXPXRXRXXXAASXXKTPPVXQGGAXXPAXVPPXXGAK 717
           P +HP    S    T  P+ P   P         +   TPP  Q  +  P+ +PP    K
Sbjct: 31  PPSHPPIQPSSQPPTQPPSQPPTQPPTQPPSHPPTQPPTPPPSQSPS-QPSPLPPNIACK 89

Query: 718 S 720
           S
Sbjct: 90  S 90


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 27/113 (23%), Positives = 34/113 (30%), Gaps = 2/113 (1%)
 Frame = +1

Query: 589 PTXPAXXPXRXRXXXAASXXKTPPVXQGGAXXPAXVPPXXGAKSGRPXRSLP--RHXPXT 762
           PT  A  P       AA     PP   G A  P   PP  G ++  P    P  ++   +
Sbjct: 517 PTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPMQNRAPS 576

Query: 763 XXPXPXAXXXTAXXXTXXEXXPRAXNTXXPXPXXXXRXPXTAHXHGRTXXPHP 921
             P P     +          P A     P P      P  A  +G    P P
Sbjct: 577 PPPMPMGNSGSGGPPPPPPPMPLANGATPPPP-----PPPMAMANGAAGPPPP 624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.133    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,838
Number of Sequences: 28952
Number of extensions: 166944
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3653026368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)