Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D14
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   3.4  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   3.4  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   7.9  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 262 FSIYLPPQAEGGDVKLPLLYY 324
           F+ Y+PP+  GGD+ +P  +Y
Sbjct: 20  FNGYVPPEQNGGDIVVPKDFY 40


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 379 RYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVS 480
           RY  + G IV+   ++PR +K +GD   +DF +S
Sbjct: 219 RYCLQRGFIVLPKSSTPRRIKENGD--VFDFEIS 250


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 482 ALTPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPDLVMKFCSLQVRP 330
           A TP    +SS    TP   +S   ++TP S+A L+ P +  +  +  V+P
Sbjct: 669 ASTPAVTAKSSFHYATPTSGLSNFNSVTPSSSASLYPPLIPSEARTPSVQP 719


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,353
Number of Sequences: 5004
Number of extensions: 58187
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)