Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D14
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +1

Query: 754 IWEKIR-VNGQNGMPQXWXXIQWASSY 831
           +W   R VNG    P  W  + W S++
Sbjct: 147 VWRDARIVNGTRQPPNNWLSVFWGSAW 173


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 346 HYKLDQTNNIEVVISHHPLLPE-GGDR*KNSFCI 248
           H  L++TNNI  +++  P+L E   DR +N   +
Sbjct: 259 HSILNRTNNIFELVTVEPILTERPSDRQRNEILL 292


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 433 HVVKYQDLRQLHHVRLHTSGNQI***SFVHYKLDQTNNIEVVISHHPL 290
           H V+ QD+ Q H + +HT         F   +L +  NI   ++  PL
Sbjct: 383 HAVRNQDVVQTHVLTIHTIPEVKVTPRFQAKRLKEEANIRCHVAGEPL 430


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 421 TSPRGVKIDGDDSSWDFGVSAGFYLDATNEP 513
           T+P G +I+    + DFG  A F  +    P
Sbjct: 305 TAPLGAEIEPSTQTIDFGRPATFTCNVRGNP 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,366
Number of Sequences: 438
Number of extensions: 4529
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)