Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D13
         (1028 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F1FE1C Cluster: PREDICTED: similar to hCG2036584...    34   6.8  
UniRef50_Q4A2Z7 Cluster: Putative membrane protein precursor; n=...    33   9.1  

>UniRef50_UPI0000F1FE1C Cluster: PREDICTED: similar to hCG2036584,;
           n=1; Danio rerio|Rep: PREDICTED: similar to hCG2036584,
           - Danio rerio
          Length = 559

 Score = 33.9 bits (74), Expect = 6.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 622 PLFPSXXLXSSXSSSXPSXAPPXFXSSSXXXPSXPSSXPFXXSPXXXLP 476
           PL PS  L ++  +S P   PP F       P+ P+S P   +P   LP
Sbjct: 429 PLPPSLPLPTNFPTSLPPSVPPSFPLRPSLPPALPASLPPSLAPSLPLP 477


>UniRef50_Q4A2Z7 Cluster: Putative membrane protein precursor; n=1;
           Emiliania huxleyi virus 86|Rep: Putative membrane
           protein precursor - Emiliania huxleyi virus 86
          Length = 516

 Score = 33.5 bits (73), Expect = 9.1
 Identities = 21/64 (32%), Positives = 21/64 (32%)
 Frame = -2

Query: 655 PPPXXXPFXXXPLFPSXXLXSSXSSSXPSXAPPXFXSSSXXXPSXPSSXPFXXSPXXXLP 476
           PPP   P    PL P     S    S P   PP     S   PS P   P   SP    P
Sbjct: 28  PPPSPPPPSPPPLPPPLPPPSPPPPSPPPSPPPPLPPPSPSPPSPPPPSPPPPSPPPPSP 87

Query: 475 LXXP 464
              P
Sbjct: 88  PSPP 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.306    0.138    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,382,072
Number of Sequences: 1657284
Number of extensions: 2000314
Number of successful extensions: 3618
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3253
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 98388569807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)