Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D13
         (1028 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0184 - 21413275-21414267                                         30   2.6  
03_01_0515 - 3864796-3865425                                           30   3.4  
06_03_1310 + 29238644-29240260                                         29   7.9  

>09_06_0184 - 21413275-21414267
          Length = 330

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -2

Query: 613 PSXXLXSSXSSSXPSXAPPXFXSSSXXXPSXPSSXPFXXSPXXXLP 476
           P+  L +S  S+ PS  PP   SSS   PS P   P   SP    P
Sbjct: 80  PAPALPTSMESTFPSPRPPSTPSSS-TPPSSPVPPPSARSPTVPAP 124


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 17/55 (30%), Positives = 17/55 (30%)
 Frame = -2

Query: 655 PPPXXXPFXXXPLFPSXXLXSSXSSSXPSXAPPXFXSSSXXXPSXPSSXPFXXSP 491
           PPP   P    P  P     S      P   PP   S     PS P   P   SP
Sbjct: 62  PPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSP 116


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 22/64 (34%), Positives = 23/64 (35%)
 Frame = -2

Query: 655 PPPXXXPFXXXPLFPSXXLXSSXSSSXPSXAPPXFXSSSXXXPSXPSSXPFXXSPXXXLP 476
           PPP        P  P     S  SS  PS +PP   SS    P   SS P    P   LP
Sbjct: 399 PPPSSPTPSHLPPPPPTYSESPKSSMPPSTSPP---SSHGASPPSSSSSPPTEHPGYVLP 455

Query: 475 LXXP 464
              P
Sbjct: 456 PLTP 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.306    0.138    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,178,968
Number of Sequences: 37544
Number of extensions: 84475
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3024393764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)