Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D13
         (1028 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)              29   6.1  
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.0  

>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
          Length = 549

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 574 PSXAPPXFXSSSXXXPSXPSSXPFXXSPXXXLPLXXP 464
           PS  PP F  S     S PS+ P   +P   LP+  P
Sbjct: 495 PSHTPPVFTPSHTPPVSTPSNSPPVSTPSNTLPVFTP 531


>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = -2

Query: 649 PXXXPFXXXPLFPSXXLXSSXSSSXPS---XAPPXFXSSSXXXPSXPSSXP 506
           P   P      +P+    SS SSS PS    +PP   S S   PS P S P
Sbjct: 126 PIIAPHHHPHHYPTYPPSSSPSSSFPSVPPSSPPSSSSPSSSSPSVPPSSP 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.306    0.138    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,280,636
Number of Sequences: 59808
Number of extensions: 57632
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3071064787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)