Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D13
         (1028 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    32   0.54 
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family...    30   2.2  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    30   2.9  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   5.0  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    29   5.0  
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    29   6.6  

>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = -2

Query: 655 PPPXXXPFXXXPLFPSXXLXSSXSSSXPSXAPPXFXSSSXXXPSXPSSXP 506
           PPP   P    PLF S    S      P   PP F S++   PS P   P
Sbjct: 482 PPPPPPP--PPPLFTSTTSFSPSQPPPPPPPPPLFMSTTSFSPSQPPPPP 529



 Score = 31.5 bits (68), Expect = 0.94
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = -2

Query: 655 PPPXXXPFXXXPLFPSXXLXSSXSSSXPSXAPPXFXSSSXXXPSXPSSXP 506
           PPP   P    PLF S    S      P   PP F S++   PS P   P
Sbjct: 504 PPPPPPP---PPLFMSTTSFSPSQPPPPPPPPPLFTSTTSFSPSQPPPPP 550


>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 205

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 20/58 (34%), Positives = 20/58 (34%)
 Frame = -3

Query: 756 PPFXXXPLXSPXXXSPXXXSPGXPPFXFSXXXXXPPRVXXXXLXXPSSPLXSXXXPFP 583
           PP    PL SP    P   SP  PP  FS     PP         P SP      P P
Sbjct: 13  PPSHQHPLPSPVPPPPSHISPPPPP--FSPPHHPPPPHFSPPHQPPPSPYPHPHPPPP 68


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/60 (31%), Positives = 21/60 (35%)
 Frame = -2

Query: 655 PPPXXXPFXXXPLFPSXXLXSSXSSSXPSXAPPXFXSSSXXXPSXPSSXPFXXSPXXXLP 476
           PPP   P    P  P      + + S PS  PP         PS PS  P   SP    P
Sbjct: 100 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTP-PVSPPPPTP 158



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -2

Query: 655 PPPXXXPFXXXPLFPSXXLXSSXSSSXPSXAPPXFXSSSXXXPSXPSSXP 506
           PPP   P    P  P      + + S PS  PP         PS PS  P
Sbjct: 118 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTP 167


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
 Frame = -3

Query: 774 PXXXSXPPFXXXPLXSPXXXSPXXXS-PGXPPFXFSXXXXXPPRVXXXXLXXPSSPLXSX 598
           P   S PP    P   P   SP   S P  PP  +S     PP         P  P+ S 
Sbjct: 461 PPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSS 520

Query: 597 XXPFP 583
             P P
Sbjct: 521 PPPPP 525


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 22/52 (42%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -2

Query: 655 PPPXXXPFXXXPLFPSXXLXSSXSSSXPSXAPPXFXSSSXXXP--SXPSSXP 506
           PPP         L PS  L  S  SS PS APP   S S   P    PSS P
Sbjct: 69  PPPPPSSSPLSSLSPS--LSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPP 118


>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 655 PPPXXXPFXXXPLFPSXXLXSSXSSSXPSXAPP 557
           PPP   P    P FPS    S+ S   P+  PP
Sbjct: 88  PPPPPSPPHPNPFFPSSDPTSTASHPPPAPPPP 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.306    0.138    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,451,985
Number of Sequences: 28952
Number of extensions: 57557
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2521088960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)