Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D10
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0206 + 41990251-41992032,41992131-41992361                       33   0.41 
04_03_0670 - 18544745-18545119,18545319-18545551,18546377-185464...    31   1.7  
08_02_0975 + 23205590-23205733,23206813-23206894,23207017-232071...    30   2.9  
01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848     29   6.7  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   8.8  
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105...    28   8.8  

>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
 Frame = +1

Query: 172 YWEYE-EGYPISGHFSKRHPRDVTWDKQVGG-----GKVFGTLGQNDDGLFGKAGYNREI 333
           +++++ EG P+    S+R  R   W++Q+GG      +++G     D  L     +NR+ 
Sbjct: 215 FYQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKD--LLTLYNFNRQY 272

Query: 334 FNDDRGKLTGQAYGTRVLGPAGGQYKLRWTSRL 432
            N D+  L+ QA  + +     GQ+K  W  R+
Sbjct: 273 VNMDKTWLSKQAEMSTL---QLGQWKPSWRHRI 302


>04_03_0670 -
           18544745-18545119,18545319-18545551,18546377-18546476,
           18546842-18546910,18547822-18547900,18547989-18548224
          Length = 363

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 323 TERSSMMTAAN*PGRPTAPGSWDLQGDSTNYGGRLD 430
           T R   +T A    RP A  S  LQG++T  GGR+D
Sbjct: 313 TARGPDLTTAAPETRPRAAPSHGLQGEATESGGRMD 348


>08_02_0975 +
           23205590-23205733,23206813-23206894,23207017-23207127,
           23207212-23208006,23208338-23208704,23209219-23209300,
           23209477-23209532,23209888-23209942
          Length = 563

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 299 GFLVKPVTTERSSM-MTAAN*PGRPTAPG--SWDLQGDSTNYGGRLDWANKNAEAAIDIN 469
           GFLV         + +++ N PG PT+PG  S++ QG +T  G +  W+++    + +  
Sbjct: 155 GFLVNGTGAMNKGLSVSSQNKPGAPTSPGTPSYNRQG-ATVVGYQQGWSSERVALSSNGQ 213

Query: 470 RQIGGRSGMTATGSG 514
           R+  G S +    +G
Sbjct: 214 RRHSGNSMVLPHNTG 228


>01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848
          Length = 345

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 368 PTAPGSWDLQGDS 406
           PT PG+WD++GDS
Sbjct: 229 PTMPGTWDMKGDS 241


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 404  STNYGGRLDWANKNAEAAIDINRQI 478
            S+ +GG L W N + E+ +D +RQ+
Sbjct: 960  SSLHGGSLPWKNTDFESTVDFDRQL 984


>02_01_0148 -
           1051121-1051192,1051378-1051512,1052343-1052396,
           1052501-1052581,1052667-1052826,1053346-1053453,
           1053543-1053718,1053952-1054002,1054154-1054264,
           1054493-1054547,1055667-1055789,1055922-1056007,
           1056235-1056349,1056429-1056667
          Length = 521

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 204 ANWISFFVLPINFCVDTHQDRGEEI 130
           A W  F  LP  + +D H DR E++
Sbjct: 69  ALWAHFHRLPARYALDVHADRAEDV 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,833,776
Number of Sequences: 37544
Number of extensions: 523988
Number of successful extensions: 1560
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)