Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D10
         (904 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047077-1|BAB55454.1|  707|Homo sapiens kinase-like protein spl...    33   1.4  
AB051428-1|BAB55459.1|  791|Homo sapiens kinase-like protein spl...    31   4.3  
BC064370-1|AAH64370.1| 2335|Homo sapiens PRP8 pre-mRNA processin...    30   10.0 
AF092565-1|AAC61776.1| 2335|Homo sapiens splicing factor Prp8 pr...    30   10.0 
AB007510-1|BAA22563.1| 2335|Homo sapiens PRP8 protein protein.         30   10.0 

>AB047077-1|BAB55454.1|  707|Homo sapiens kinase-like protein splice
           variant 2 protein.
          Length = 707

 Score = 33.1 bits (72), Expect = 1.4
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = +2

Query: 197 QLADISQSDTRVTSPGTNKWEEGRSSARWAKTMMGFLV-KPVTTERSSMMTAAN*PGRPT 373
           QL ++ +     +SPG        S A WA T +  L  K + +  ++  T  N P RPT
Sbjct: 546 QLEEVEKDVHAASSPGMGG--AAASWAGWAVTGVSSLTSKLIRSHPTTAPTETNIPQRPT 603

Query: 374 APGSWDLQ---GDSTNYGGRLDW 433
             G W+ Q    D T      +W
Sbjct: 604 PEGHWETQEPPPDGTRLASEYNW 626


>AB051428-1|BAB55459.1|  791|Homo sapiens kinase-like protein splice
           variant 1 protein.
          Length = 791

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 197 QLADISQSDTRVTSPGTNKWEEGRSSARWAKTMMGFLV-KPVTTERSSMMTAAN*PGRPT 373
           QL ++ +     +SPG        S A WA T +  L  K + +  ++  T  N P RPT
Sbjct: 546 QLEEVEKDVHAASSPGMGG--AAASWAGWAVTGVSSLTSKLIRSHPTTAPTETNIPQRPT 603

Query: 374 APGSWDLQ 397
             G W+ Q
Sbjct: 604 PEGHWETQ 611


>BC064370-1|AAH64370.1| 2335|Homo sapiens PRP8 pre-mRNA processing
            factor 8 homolog (S. cerevisiae) protein.
          Length = 2335

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +3

Query: 513  ECGILTRTPAS------QPAVWSRRNSVTEDRTSASRQSSAMIGDPEDPSRHHRSKQ*SF 674
            EC IL +   S      +  VW+ +N VT++RT+   Q    + D      H+R +Q   
Sbjct: 1193 ECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTA---QCFLRVDDESMQRFHNRVRQILM 1249

Query: 675  AKGIDTFT 698
            A G  TFT
Sbjct: 1250 ASGSTTFT 1257


>AF092565-1|AAC61776.1| 2335|Homo sapiens splicing factor Prp8
            protein.
          Length = 2335

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +3

Query: 513  ECGILTRTPAS------QPAVWSRRNSVTEDRTSASRQSSAMIGDPEDPSRHHRSKQ*SF 674
            EC IL +   S      +  VW+ +N VT++RT+   Q    + D      H+R +Q   
Sbjct: 1193 ECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTA---QCFLRVDDESMQRFHNRVRQILM 1249

Query: 675  AKGIDTFT 698
            A G  TFT
Sbjct: 1250 ASGSTTFT 1257


>AB007510-1|BAA22563.1| 2335|Homo sapiens PRP8 protein protein.
          Length = 2335

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +3

Query: 513  ECGILTRTPAS------QPAVWSRRNSVTEDRTSASRQSSAMIGDPEDPSRHHRSKQ*SF 674
            EC IL +   S      +  VW+ +N VT++RT+   Q    + D      H+R +Q   
Sbjct: 1193 ECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTA---QCFLRVDDESMQRFHNRVRQILM 1249

Query: 675  AKGIDTFT 698
            A G  TFT
Sbjct: 1250 ASGSTTFT 1257


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,902,816
Number of Sequences: 237096
Number of extensions: 2768782
Number of successful extensions: 6649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6630
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)