Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D09
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   5.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.7  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 687 YENVSFNHRMFNXNYEN 637
           Y N ++N+  +N NY N
Sbjct: 333 YNNNNYNNNNYNNNYNN 349


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +3

Query: 99  CSARCS*FEHVSNIS*WQEXRERTXIMVKPDGVQRGLVGTIIERF---EKKGFKLV 257
           C  RCS +  VS    WQ   ER+ +  +  G +   V     R    EKK  K++
Sbjct: 53  CRGRCSSYLQVSGSKIWQ--MERSCMCCQESGEREASVSLFCPRAKPGEKKFRKVI 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,163
Number of Sequences: 438
Number of extensions: 3257
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)