Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D07
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    29   1.1  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    28   2.0  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    27   2.6  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    27   4.5  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   6.0  

>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 256 SVYLNLNTKEFGEISGINSGIATAYDRSKHVVYLGGE-DGIYTFDYTTKSAKNF 414
           S+   L+T +     G +S      D S  V+ LG E DG++TFD   + AK+F
Sbjct: 365 SITKKLDTHDITRGRGSDSPKEVMKDLSLPVLVLGIESDGLFTFDEQVEIAKSF 418


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 565 QSCXDVGEFWYRSYLTVRIDK 503
           Q C  V  FWYR  + V +DK
Sbjct: 69  QDCFTVAHFWYRILIKVGVDK 89


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +3

Query: 351 VPWWRGWDIYI*LHNEICKEFCVSQVTASGKCSIVPSTASTSRLSILTKKRLSILTVK*D 530
           +P ++ WDI I   N I  E+C+  +   G C ++     T   +I   + L +  +  D
Sbjct: 119 MPQYKDWDIKITNGNTIGLEYCLRLLVNRGDCILIEK--YTYPAAITAMRPLGVKFIPID 176

Query: 531 LYQN 542
           + +N
Sbjct: 177 MDEN 180


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 403 AKNFACHKLQHLANVPLSRPRPLLHDF 483
           AKN  C  L HL +   +RP+  +H+F
Sbjct: 38  AKNATCTTLNHLLSAQHTRPQLNIHNF 64


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 374 YIHLITQRNLQRILRVTSYSIWQMFHCPVHGLYFTTFNPDEK 499
           Y+ L+++R   ++       +  +FH    GL   T++PD K
Sbjct: 336 YLALVSERGTLKLFDFVKEHVLDVFHSYFAGLTCVTWSPDGK 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,905
Number of Sequences: 5004
Number of extensions: 59945
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)