Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D07
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50799| Best HMM Match : I-set (HMM E-Value=0)                       28   8.5  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)             28   8.5  
SB_58656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1195

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/48 (22%), Positives = 28/48 (58%)
 Frame = -2

Query: 703 TINVTCESINSKSX*MYFIQDSIDSFQYKYTSGVSKIYIVFXADSNQS 560
           T+N+TC ++   +  +Y++++   S ++K T+  +K  ++F  +   S
Sbjct: 459 TLNLTCVALGDPAPRVYWVREGAGSSRFKLTND-NKTLVIFQTEYRDS 505


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = +1

Query: 244  TVLKSVYLNLNTKEFGEISGINSGIATAYDRSKHVVYLGGEDGIYTFDYTTKSAKN 411
            T LK   + + T         N    T YD  +  V   GE+G    D + KS +N
Sbjct: 3374 TYLKDHGIPVPTSLRSSTESRNKSAFTQYDERRKAVKQAGEEGFVPIDLSPKSGRN 3429


>SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -2

Query: 637 IDSFQYKYTSGVSKIYIVFXADSNQSCXDVGEFWY---RSYLTVRI-DKRFFVRIESREV 470
           + S +  Y   V+  Y++     NQSC DV  F Y    +YL   I DKR  +   S   
Sbjct: 204 VTSLRPGYLEAVTNSYMLKGVLVNQSCSDVPHFRYTAGSNYLNEMIKDKRDSLSRWSTHS 263

Query: 469 EAVDGTME 446
           + VD ++E
Sbjct: 264 QTVDPSIE 271


>SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)
          Length = 798

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 491 DEKAFVYSYGQVGPVPELTDIXTRLIAVGXKHDIYFANSAGIF 619
           + K F++  G    +PE  ++  R+  +G +  I   N  GIF
Sbjct: 434 EAKRFMFRPGGASELPERLNVGDRVATLGSQDPIIVTNDVGIF 476


>SB_58656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 421 DTQNSLQISLCNQMYISHP--LHQGTQRVCFY 332
           +T    +++ C+Q Y+S P  LH G  ++C Y
Sbjct: 17  ETHTQPEVTCCHQTYVSDPGKLHSGKCKLCRY 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,153,182
Number of Sequences: 59808
Number of extensions: 432240
Number of successful extensions: 969
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)