Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D07
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical...    29   5.6  

>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -3

Query: 408 LCRFRCVIKCIYPILSTKVHNVFASIICSSYARIDAGYFAELFSVKVQVNGFKNRFSL 235
           L RF     C+YPI+ T    +F +I   SYA     + A +F ++    G  N FSL
Sbjct: 155 LLRFSIPFICVYPIIFT--FFMFPAIGYCSYAAYPFPFGAIIFRIERTFFGLVNNFSL 210


>AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical
           protein Y71G12B.5 protein.
          Length = 1098

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +1

Query: 241 KTVLKSVYLNLNTKEFGEISGINS------GIATAYDRSKHVVYLGGEDGIYTFDYTTKS 402
           KT L +V   L +K+   I+ + S      G    YD+   +  L        F +T KS
Sbjct: 131 KTFLGTVTKALESKDASRIATLFSDDFSFKGCKGTYDKQSVIKMLSNIPAGTPFSFTIKS 190

Query: 403 AKNFACHKLQHLANVPLSRPRPLLHDF 483
           AK  A  +++H+ ++      PL   F
Sbjct: 191 AKFIATGRIEHVVSINGFSATPLEAQF 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,620,651
Number of Sequences: 27780
Number of extensions: 331619
Number of successful extensions: 823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)