Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D07
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   2.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 374  IPSSPPRYTTC-LLLSYAVAMPELMPDIS-PNSLVLRFK 264
            +P  PP  TTC  L S  + +  + P +S  N ++  +K
Sbjct: 1080 VPEQPPHDTTCTTLTSQTIRISWMSPPLSAANGVITGYK 1118


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 381 CIYPILSTKVHNVFASIICSSYAR 310
           CIY + S      F SIIC  + +
Sbjct: 60  CIYALFSKDFRFAFKSIICKCFCK 83


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 381 CIYPILSTKVHNVFASIICSSYAR 310
           CIY + S      F SIIC  + +
Sbjct: 508 CIYALFSKDFRFAFKSIICKCFCK 531


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -3

Query: 624 STNIPAELAKYISC--XWPTAIN 562
           ST +PA  AK +SC   W  AIN
Sbjct: 317 STMLPAVFAKTVSCIDPWIYAIN 339


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -3

Query: 624 STNIPAELAKYISC--XWPTAIN 562
           ST +PA  AK +SC   W  AIN
Sbjct: 317 STMLPAVFAKTVSCIDPWIYAIN 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,459
Number of Sequences: 438
Number of extensions: 4105
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)