Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D07
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain...    36   0.035
At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) simi...    29   3.0  
At3g62130.1 68416.m06981 epimerase-related contains weak similar...    29   5.2  
At1g65800.1 68414.m07467 S-receptor protein kinase, putative sim...    28   9.1  
At1g20570.1 68414.m02565 tubulin family protein                        28   9.1  

>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 443

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 26/73 (35%), Positives = 40/73 (54%)
 Frame = -2

Query: 550 VGEFWYRSYLTVRIDKRFFVRIESREVEAVDGTMEHLPDAVTCDTQNSLQISLCNQMYIS 371
           VGE  +R  ++ + DK+  VR  S  V+A    ME+LP+AV   T   L++ L NQ   +
Sbjct: 254 VGERKWRIKISPKGDKK--VRALSVYVQA----MEYLPNAVASTTYAKLKLQLMNQKNTN 307

Query: 370 HPLHQGTQRVCFY 332
           H   +GT +  F+
Sbjct: 308 HIEKRGTYQTSFF 320


>At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 415

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 99  ILXTLIAFVHGNQXVEVLKANVHNPFQLVVDYQTNTLXF 215
           +L T  +FV  N  +  L  N H P  LVV + T++L F
Sbjct: 202 LLYTCNSFVQLNHPISFLFPNTHLPLWLVVLFMTSSLAF 240


>At3g62130.1 68416.m06981 epimerase-related contains weak similarity
           to isopenicillin N epimerase (Swiss-Prot:P18549)
           [Streptomyces clavuligerus]
          Length = 454

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 262 YLNLNTKEFGEISGINSGIATAYDRSKHVVYLGGEDGIYTFDYTTKSAKN-FACHKLQHL 438
           YL L   E G +   +SG+ TAY R  H VY   ED     D  T+  K+   C  L  L
Sbjct: 396 YLGLRDGEEG-VKDKDSGLITAYVRISHQVYNKTEDYERLRDAITELVKDQMTCQNLPAL 454


>At1g65800.1 68414.m07467 S-receptor protein kinase, putative
           similar to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 847

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 282 FSVKVQVNGFKNRFSLGQRRVTEKXGCWFGSR 187
           FS K++ +GF   +   +  +T + G W G+R
Sbjct: 194 FSTKLRTSGFPEFYIYNKESITYRSGPWLGNR 225


>At1g20570.1 68414.m02565 tubulin family protein
          Length = 976

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 643 DSIDSFQYKYTSGVSKIYIVFXADSNQSCXDVGEFWYRSYLTVRI 509
           +S+DS+ ++ T       + F A+ + S  D  EFW +SYL  R+
Sbjct: 239 ESLDSWLFEGTLDDPFEELFFTANQSVSVSDA-EFWEKSYLLTRV 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,420,843
Number of Sequences: 28952
Number of extensions: 296395
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)