Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D06
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   154   7e-38
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   122   4e-28
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   122   4e-28

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  154 bits (374), Expect = 7e-38
 Identities = 70/126 (55%), Positives = 99/126 (78%)
 Frame = +2

Query: 131 GKTGXXHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVM 310
           GK+   HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG +KG   G+V+
Sbjct: 12  GKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVL 70

Query: 311 QVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALG 490
           + YRKKFV++I++I REKANG+T ++GIHPSK  I KLK++KDR+A+++R+A GR    G
Sbjct: 71  RCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTG 130

Query: 491 KDKGKY 508
             KGK+
Sbjct: 131 ILKGKH 136


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  122 bits (293), Expect = 4e-28
 Identities = 54/92 (58%), Positives = 75/92 (81%)
 Frame = +2

Query: 131 GKTGXXHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVM 310
           GK+   HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG +KG   G+V+
Sbjct: 12  GKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKG-NTGRVL 70

Query: 311 QVYRKKFVVYIERIQREKANGATAYVGIHPSK 406
           + YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 71  RCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  122 bits (293), Expect = 4e-28
 Identities = 54/92 (58%), Positives = 75/92 (81%)
 Frame = +2

Query: 131 GKTGXXHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVM 310
           GK+   HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG +KG   G+V+
Sbjct: 12  GKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKG-NTGRVL 70

Query: 311 QVYRKKFVVYIERIQREKANGATAYVGIHPSK 406
           + YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 71  RCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,124,525
Number of Sequences: 27780
Number of extensions: 285063
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)