Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D06
         (875 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   165   3e-41
At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           163   1e-40
At3g04670.1 68416.m00500 WRKY family transcription factor simila...    28   7.1  
At1g28070.1 68414.m03436 expressed protein ; expression supporte...    28   9.4  

>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  165 bits (402), Expect = 3e-41
 Identities = 81/123 (65%), Positives = 102/123 (82%)
 Frame = +2

Query: 134 KTGXXHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQ 313
           K    HF+A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG YKG++ GKV+Q
Sbjct: 13  KNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGRE-GKVVQ 71

Query: 314 VYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 493
           VYR+K+V++IERI REK NG T  VGI PSK VI KL+++KDRK++L+R+AKGR AA  K
Sbjct: 72  VYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGR-AAADK 130

Query: 494 DKG 502
           +KG
Sbjct: 131 EKG 133


>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  163 bits (396), Expect = 1e-40
 Identities = 79/123 (64%), Positives = 102/123 (82%)
 Frame = +2

Query: 134 KTGXXHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQ 313
           K    HF+APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG +KG++ GKVMQ
Sbjct: 13  KNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGRE-GKVMQ 71

Query: 314 VYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 493
           VYR+K+V++IERI REK NG+T  VG++ S  +I KL+++KDRK++L+R+A GR AA  K
Sbjct: 72  VYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGR-AAADK 130

Query: 494 DKG 502
           +KG
Sbjct: 131 EKG 133


>At3g04670.1 68416.m00500 WRKY family transcription factor similar
           to elicitor response element binding protein WRKY3
           isolog GB:AAB63078 [Arabidopsis thaliana]
          Length = 330

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 222 NFCLSSLDRGEDI-NTRLICEGALKC 148
           +F L+ L RG D  +TR +C G+LKC
Sbjct: 203 SFHLTGLSRGSDQQHTRKMCSGSLKC 228


>At1g28070.1 68414.m03436 expressed protein ; expression supported
           by MPSS
          Length = 176

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 149 HFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGK 304
           HFS PSH+ + L     + E+  +     M +++D    + RG+Y  Q  G+
Sbjct: 47  HFSVPSHLEQCL--DLKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSGE 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,676
Number of Sequences: 28952
Number of extensions: 256452
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)