Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D05
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    31   0.29 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   1.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   2.0  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   3.6  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   6.2  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   8.2  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -2

Query: 699  IGFVNEVVVFLVNAILSCGFRINEAMLHLCYVNFLQHFHIHKHFRVY 559
            I  + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 917  IHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 312 KFFNSFLVXCSCPYSFRYHSLCQFYNIHHQ--CLVGSHLG 199
           K   +FL  C      +Y++ C FYNI H   C  G  LG
Sbjct: 23  KTCENFLKLCK----LKYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 814 STRTVNESGSSSSKRSCQYPQ*SMSAFVLH 725
           +T TV+ESGSSS+  +  YP  ++S    H
Sbjct: 592 TTSTVSESGSSSASITSTYPSSTLSMTTSH 621


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 613 KMQHGLINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEEQRLTYF 750
           ++ H L   +   K    K ND F++ +  +N +  N+++ +L YF
Sbjct: 528 RISHTLELQDILVKLSTPKNNDVFIFSSKITNKL--NDDQSKLWYF 571


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 754 EDIGMNAYYYYFHSHLPFWWTSEKYG 831
           +DIGM AY       L F W S+++G
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 189 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 281
           L+FF  Q+V Q+N +DEY +   + D E  +DN
Sbjct: 49  LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,420,603
Number of Sequences: 5004
Number of extensions: 70440
Number of successful extensions: 243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)