Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D05
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   29   3.8  
SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            29   6.6  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        29   6.6  
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -2

Query: 606 VNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGTLVERFK 427
           VN +Q F    + ++   +SR+   + +R  DN D EG+ E T     T   G L + F 
Sbjct: 658 VNDIQDFAFSNNMKLNPAKSRHQAFIPLRCKDNGDREGMFEAT-----TTPGGVLCKNFW 712

Query: 426 VLSV 415
           V +V
Sbjct: 713 VKAV 716


>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 138 IKSKNVDAVFVEKQKKILSFFQDVSQLNTDD-EYYKIGKD---YDIEM 269
           I  + ++A  +EK K++L FF  +   N +D EY  I  +   Y +EM
Sbjct: 227 ILKEEIEAFSIEKMKEVLLFFDPIDVSNMEDFEYSHINAEDIMYSLEM 274


>SB_22188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1046

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 850 TTLFKGLRIFLMSTRTVNESGSSSSKRSCQYPQ*SMSAFVLHYCI 716
           +TLF+ L     +T  VN   ++   R C YPQ  + +F+L+Y I
Sbjct: 785 STLFRKLENMAQNTFYVNLILTAVITRLCYYPQPLLKSFLLNYNI 829


>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +1

Query: 298 AVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKSACFARVHLNQ 477
           A++E   MY+TG + +   F   + K+ D     F +F      E  Y+S C   VHL++
Sbjct: 372 ALKELWSMYQTGELKRR--FQEAFAKISDGQEIKFSVFID----ENEYRSICLNLVHLSR 425

Query: 478 GQFL 489
            +F+
Sbjct: 426 AEFV 429


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 29  SLRFDSLLLGWKHEVCLDSGWACSRRAQQCSTK 127
           SL FD + +G K EV L SG   SRRA QC+ +
Sbjct: 125 SLGFDVIGVG-KEEVMLRSGKLNSRRAVQCTVR 156


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +2

Query: 29   SLRFDSLLLGWKHEVCLDSGWACSRRAQQCSTK 127
            SL FD + +G K EV L SG   SRRA QC+ +
Sbjct: 1850 SLGFDVIGVG-KEEVMLRSGKLNSRRAVQCTVR 1881


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 62  KHEVCLDSGWAC-SRRAQQCSTKTEHHKVKKC--GCRIC*KAKENSVLLPRCE 211
           KH+VCLD+   C +R+AQ    K + +    C   C +C   K     +P C+
Sbjct: 742 KHDVCLDNEVDCEARKAQGYCEKRKTYMQFNCRKTCGMCGTRKSLKPAMPVCK 794


>SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 276 PYSFRYHSLCQF-YNIHHQCLVGSHLGRRTEFSFAFQQIRHP 154
           P+S+R    C+F   +H+ CL  +H  +  EF +   +   P
Sbjct: 68  PFSYRNKVFCRFDAAVHYDCLYVTHKKKHVEFRWLHIEFLQP 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,129,850
Number of Sequences: 59808
Number of extensions: 511913
Number of successful extensions: 1186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)