Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_D05
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 30 1.9
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 30 1.9
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 30 1.9
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 30 2.5
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 30 2.5
AF040653-8|AAB95031.1| 532|Caenorhabditis elegans F-box b prote... 29 3.3
Z81562-4|CAB04556.1| 360|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 29 5.8
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 29 5.8
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 29 5.8
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 29 5.8
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 29 5.8
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 29 5.8
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 29 5.8
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 628 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 732
+++P IHKE F YK+N A+LY E
Sbjct: 227 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 261
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 628 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 732
+++P IHKE F YK+N A+LY E
Sbjct: 211 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 245
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 628 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 732
+++P IHKE F YK+N A+LY E
Sbjct: 208 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 242
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 343 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKSACFARVHLNQ 477
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 343 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKSACFARVHLNQ 477
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>AF040653-8|AAB95031.1| 532|Caenorhabditis elegans F-box b protein
protein 50 protein.
Length = 532
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 271 IWTTTLNKKAVEEFLKMYRTGFMPKNLEFSV 363
IW T L +K + FLK + GF P+ +F V
Sbjct: 256 IWDTQLTEKDINVFLKHWIAGFKPELEQFRV 286
>Z81562-4|CAB04556.1| 360|Caenorhabditis elegans Hypothetical
protein K03D7.7 protein.
Length = 360
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 220 TLMMNIIKLAKTMISK*IWTTTLNKKAVEEFLKMYRTGFM 339
T + NI+K K + SK ++ +N + V FL+ ++ GF+
Sbjct: 240 TSIQNILKSRKLLRSKSVYFEFVNIENVSSFLQHFKAGFL 279
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 141 KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 236
+SK+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 141 KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 236
+SK+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 633 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 484
N + V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 633 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 484
N + V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 633 NEAMLHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 484
N + V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 141 KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 236
+SK+VDA KQK ++ Q V LN +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 321 HLQKFFNSFLVXCSCPYS-FRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHPHFL 145
H++ FN C P S + ++L Q+Y +HH VG + ++EF Q +R +
Sbjct: 951 HVRNVFNMMPKVCKLPRSDYGSNALLQYY-VHHLEAVGKYPELKSEFC---QDLRELGNM 1006
Query: 144 TLWCSVL 124
++C L
Sbjct: 1007 IVFCQQL 1013
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 321 HLQKFFNSFLVXCSCPYS-FRYHSLCQFYNIHHQCLVGSHLGRRTEFSFAFQQIRHPHFL 145
H++ FN C P S + ++L Q+Y +HH VG + ++EF Q +R +
Sbjct: 951 HVRNVFNMMPKVCKLPRSDYGSNALLQYY-VHHLEAVGKYPELKSEFC---QDLRELGNM 1006
Query: 144 TLWCSVL 124
++C L
Sbjct: 1007 IVFCQQL 1013
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,860,297
Number of Sequences: 27780
Number of extensions: 398006
Number of successful extensions: 993
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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