Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D05
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    34   0.14 
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    33   0.33 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    33   0.33 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    32   0.58 
At4g23200.1 68417.m03346 protein kinase family protein contains ...    29   5.4  
At5g07610.1 68418.m00872 F-box family protein similar to unknown...    28   9.5  

>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +2

Query: 74  CLDSGWACSRRAQQCSTKTEHHKVKKCGCRIC*KAKENS--VLLPRCEPTK 220
           CL S W C   + + +   E    K+C C +C    EN    L   CEP K
Sbjct: 42  CLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDENKDPSLWLVCEPEK 92


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 576 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGTLVERFKVLS 418
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -2

Query: 576 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGTLVERFKVLS 418
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 286 LNKKAVEEFLKMYRTGFMPKNLEFSVFYD 372
           L  KA+E F +MY+TG MP  + +S   D
Sbjct: 236 LYNKAIEWFERMYKTGLMPDEVTYSAILD 264


>At4g23200.1 68417.m03346 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 648

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 381 PHLVIKNGEL*ILRHKTSPVHLQKFFN-SFLVXCSCPYSFRYHSLCQFYNIHHQCL 217
           P  +IK GE    +  ++    +K FN ++   C   YS RYH L     +H Q L
Sbjct: 259 PPSLIKKGEF-FAKFMSNSQEPRKVFNGNYCCNCCSHYSGRYHLLAGITTLHFQQL 313


>At5g07610.1 68418.m00872 F-box family protein similar to unknown
           protein (emb|CAB85517.1)
          Length = 420

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = -2

Query: 339 HKTSPVHLQKFFNSFLVXCSCPYSFRYHSLCQFYN-IHHQCLVGSHLGRRTEFSFAFQQI 163
           H+T  + +Q      L  CSC  S  +++    YN    Q  +   +      S AF   
Sbjct: 120 HQTDMIIMQSTNGLLLCKCSCASSNHFNTNYYVYNPTTKQYTLLHQIAGHIALSLAFDPS 179

Query: 162 RHPHF 148
           R PH+
Sbjct: 180 RSPHY 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,503,565
Number of Sequences: 28952
Number of extensions: 353672
Number of successful extensions: 894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)