Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D04
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   184   2e-47
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   184   2e-47
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    29   0.66 
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   1.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   4.7  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  184 bits (447), Expect = 2e-47
 Identities = 90/162 (55%), Positives = 105/162 (64%)
 Frame = +1

Query: 133 KLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXXXXXXXXX 312
           +L +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ           
Sbjct: 9   ELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRR 68

Query: 313 XXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYK 492
                      TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK
Sbjct: 69  GGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYK 128

Query: 493 YFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGSQ 618
           +FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G +
Sbjct: 129 FFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKK 170



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 633 GKGHXYSQTKGGSRRAAWLXRNTLQLRRKR 722
           GKGH ++ +    + A WL  NTL LRR R
Sbjct: 175 GKGHRFNNSP---QHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  184 bits (447), Expect = 2e-47
 Identities = 90/162 (55%), Positives = 105/162 (64%)
 Frame = +1

Query: 133 KLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXXXXXXXXX 312
           +L +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ           
Sbjct: 9   ELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRR 68

Query: 313 XXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYK 492
                      TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK
Sbjct: 69  GGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYK 128

Query: 493 YFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGSQ 618
           +FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G +
Sbjct: 129 FFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKK 170



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 633 GKGHXYSQTKGGSRRAAWLXRNTLQLRRKR 722
           GKGH Y+ +    + A WL  NTL LRR R
Sbjct: 175 GKGHRYNNSP---QHATWLRHNTLSLRRYR 201


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = +1

Query: 541 DPKINWIVNAVHKHREMRGLTSAGSQLPRSRARDIXTLKQ-REAHAGQLGSXATLFNYV- 714
           D KIN      ++H+E  G    G  L    A     L   R A A    S  TL N V 
Sbjct: 22  DAKINEAKKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTLINKVK 81

Query: 715 ANDKHLSKTVSD 750
           A D+ L K V +
Sbjct: 82  AQDELLKKKVKE 93


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 470 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 583
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 475  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 579
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,375
Number of Sequences: 5004
Number of extensions: 59969
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)