Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D04
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...   180   2e-45
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...   178   4e-45
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     31   0.014
05_02_0037 + 5883285-5884292                                           31   0.92 
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     31   1.2  
03_05_0543 - 25404630-25405408,25405461-25405605                       30   2.8  

>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score =  180 bits (437), Expect = 2e-45
 Identities = 87/176 (49%), Positives = 107/176 (60%)
 Frame = +1

Query: 91  PQAAKXGCLQNIFRKLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYR 270
           P+    G       +L+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+
Sbjct: 100 PRGKDGGGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYK 159

Query: 271 AKQXXXXXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXX 450
           AKQ                       YGKPK  G+ QLK  RN +S+AEE          
Sbjct: 160 AKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLR 219

Query: 451 XXSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGSQ 618
             +SYWV +DS+YKYFE+ILVD +H AIR DP+INW+   VHKHRE+RGLTSAG +
Sbjct: 220 VLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKK 275



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 633 GKGHXYSQTKGGSRRAAWLXRNTLQLRRKR 722
           GKGH + + +  SRRA W    T+ LRR R
Sbjct: 281 GKGHTHHKARP-SRRATWKRNQTVSLRRYR 309


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score =  178 bits (434), Expect = 4e-45
 Identities = 85/162 (52%), Positives = 104/162 (64%)
 Frame = +1

Query: 133 KLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXXXXXXXXX 312
           +L+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ           
Sbjct: 9   ELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRR 68

Query: 313 XXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYK 492
                       YGKPK  G+ QLK  RN +S+AEE            +SYWV +DS+YK
Sbjct: 69  GGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYK 128

Query: 493 YFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGSQ 618
           YFE+ILVD +H AIR DP+INW+   VHKHRE+RGLTSAG +
Sbjct: 129 YFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKK 170



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 633 GKGHXYSQTKGGSRRAAWLXRNTLQLRRKR 722
           GKGH + + +  SRRA W    T+ LRR R
Sbjct: 176 GKGHTHHKARP-SRRATWKRNQTVSLRRYR 204


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 31.5 bits (68), Expect(2) = 0.014
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 496 FEVILVDPSHKAIRRDPK 549
           FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316



 Score = 25.0 bits (52), Expect(2) = 0.014
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 349 YGKPKSHGVNQLKPTRN 399
           Y KPK  G+ QLK  RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 192 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 344
           AV   ++ AP ++  +A +SP        C  R CC  +P + WWP+     GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 420 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 292
           +++ G +V  G++ V  +ALGL ++GT   W L   T  +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629


>03_05_0543 - 25404630-25405408,25405461-25405605
          Length = 307

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -3

Query: 687 AKLPGVSLPLFESXYVPCPRPRELRPSRSQTTHLTMLMYSIHDPVDLRIATNGLV*RVHE 508
           A LPGV  P       P P P  L P+ SQ          + +PV  + +  G + +  E
Sbjct: 144 APLPGVRTPPSPPRRAPAPAPAPLTPALSQRFLAERRPAPVPEPVTRKRSDLGTLMKPKE 203

Query: 507 DNLE 496
           D +E
Sbjct: 204 DKVE 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,396,261
Number of Sequences: 37544
Number of extensions: 444112
Number of successful extensions: 1019
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)