Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D04
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             200   1e-51
SB_47153| Best HMM Match : CCG (HMM E-Value=3.4)                       29   3.7  
SB_30759| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   5.0  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  200 bits (488), Expect = 1e-51
 Identities = 95/162 (58%), Positives = 113/162 (69%)
 Frame = +1

Query: 133 KLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXXXXXXXXX 312
           +LY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ           
Sbjct: 9   ELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFVIYRVRVRR 68

Query: 313 XXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYK 492
                     ATYGKP + GVN+LK  R+L+S+AEE            +SYWV QDS YK
Sbjct: 69  GGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYK 128

Query: 493 YFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGSQ 618
           YFEVI+VDP HKAIRRD +INWI    HKHRE+RGLT+AG++
Sbjct: 129 YFEVIMVDPFHKAIRRDARINWICKPTHKHRELRGLTAAGTK 170



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = +3

Query: 636 KGHXYSQTKGGSRRAAWLXRNTLQLRRKR 722
           KGH Y++  G SRRA W   NTL LRR R
Sbjct: 176 KGHNYNKVIGSSRRANWKRHNTLSLRRYR 204


>SB_47153| Best HMM Match : CCG (HMM E-Value=3.4)
          Length = 328

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = -3

Query: 684 KLPGVSLPLFESXYVPCPRPRELRPSRSQTT 592
           KLP V  P F S   P P P  L PS +QTT
Sbjct: 21  KLPDVHSPHFNSVASP-PNPASLNPSPTQTT 50


>SB_30759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 547 KINWIVNAVHKHREMRGLTSAGSQLPRSRARDIXTLKQREAHAGQL 684
           K N  V+A H  R +  L   G +L     RDI  L+Q+E + G++
Sbjct: 92  KPNDEVSARHLRRRVSHLQKVGGRLSAGGERDIHHLRQKEKNEGEV 137


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 166 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 279
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 645 YVPCPRPRELRPSRSQTTHLTMLMYSIHDPV 553
           Y+P  RP   +P +  TTHL  ++ ++  PV
Sbjct: 566 YIPALRPLTTKPHKEFTTHLHCILSALSTPV 596


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,472,080
Number of Sequences: 59808
Number of extensions: 504696
Number of successful extensions: 1074
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)