Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D04
         (878 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p pro...   226   4e-59
AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L1...   226   4e-59

>AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p
           protein.
          Length = 204

 Score =  226 bits (552), Expect = 4e-59
 Identities = 106/161 (65%), Positives = 118/161 (73%)
 Frame = +1

Query: 130 RKLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXXXXXXXX 309
           ++LYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQ          
Sbjct: 8   QELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFVIYRIRVR 67

Query: 310 XXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSY 489
                       TYGKPKSHGVNQLKP R LQSIAEE            +SYW+AQD+SY
Sbjct: 68  RGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASY 127

Query: 490 KYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAG 612
           KYFEVIL+D  H AIRRDPKINWI   VHKHRE+RGLTSAG
Sbjct: 128 KYFEVILIDTHHSAIRRDPKINWICKHVHKHRELRGLTSAG 168



 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 633 GKGHXYSQTKGGSRRAAWLXRNTLQLRRKR 722
           GKG+ YSQT GGSRRAAW  +N   + RKR
Sbjct: 175 GKGYRYSQTIGGSRRAAWKRKNREHMHRKR 204


>AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L15
           (YL10) protein homologueprotein.
          Length = 204

 Score =  226 bits (552), Expect = 4e-59
 Identities = 106/161 (65%), Positives = 118/161 (73%)
 Frame = +1

Query: 130 RKLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXXXXXXXX 309
           ++LYRKK SDVMR+LLR+RVWQYRQLT++HR+PRPTRPDKARRLGYRAKQ          
Sbjct: 8   QELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFVIYRIRVR 67

Query: 310 XXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSY 489
                       TYGKPKSHGVNQLKP R LQSIAEE            +SYW+AQD+SY
Sbjct: 68  RGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASY 127

Query: 490 KYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAG 612
           KYFEVIL+D  H AIRRDPKINWI   VHKHRE+RGLTSAG
Sbjct: 128 KYFEVILIDTHHSAIRRDPKINWICKHVHKHRELRGLTSAG 168



 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 633 GKGHXYSQTKGGSRRAAWLXRNTLQLRRKR 722
           GKG+ YSQT GGSRRAAW  +N   + RKR
Sbjct: 175 GKGYRYSQTIGGSRRAAWKRKNREHMHRKR 204


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,831,726
Number of Sequences: 53049
Number of extensions: 728372
Number of successful extensions: 2005
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)