Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D04
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   190   1e-48
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    30   1.9  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    30   1.9  
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    30   2.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  190 bits (463), Expect = 1e-48
 Identities = 85/161 (52%), Positives = 109/161 (67%)
 Frame = +1

Query: 130 RKLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXXXXXXXX 309
           ++++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ          
Sbjct: 8   QEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVVYRVRVR 67

Query: 310 XXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSY 489
                       TYGKPK+HGVN+LK  ++ Q++AE             +SYWVA+DS+Y
Sbjct: 68  RGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTY 127

Query: 490 KYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAG 612
           K++EV+L+DP HKAIRR+P   WI   VHKHRE RGLTSAG
Sbjct: 128 KFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAG 168



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 633 GKGHXYSQTKGGSRRAAWLXRNTLQLRRKR 722
           GKG  +S T+GGS+   W  +NT    RKR
Sbjct: 175 GKGWRFSATRGGSQAKNWKRKNTKVFHRKR 204


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 478 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 594
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 478 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 594
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 408  GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFS 271
            GLKVAR   LVD   +G+ + G ++  T  ATT+   + Y  TL+S
Sbjct: 972  GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,604,307
Number of Sequences: 27780
Number of extensions: 358926
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)