Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D04
         (878 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           179   2e-45
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           179   2e-45
At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloropla...    29   5.4  
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   7.2  
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff...    28   9.5  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  179 bits (436), Expect = 2e-45
 Identities = 85/162 (52%), Positives = 105/162 (64%)
 Frame = +1

Query: 133 KLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXXXXXXXXX 312
           +L+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ           
Sbjct: 9   ELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRR 68

Query: 313 XXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYK 492
                       YGKP + GV QLK  R+ +S+AEE            +SYW+ +DS+YK
Sbjct: 69  GGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYK 128

Query: 493 YFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGSQ 618
           Y+E+ILVDP+H A+R DP+INWI N VHKHRE+RGLTS G +
Sbjct: 129 YYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKK 170



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 633 GKGHXYSQTKGGSRRAAWLXRNTLQLRRKR 722
           GKGH   + +  SRRA W   N++ LRR R
Sbjct: 176 GKGHNNHKNRP-SRRATWKKNNSISLRRYR 204


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  179 bits (436), Expect = 2e-45
 Identities = 85/162 (52%), Positives = 105/162 (64%)
 Frame = +1

Query: 133 KLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXXXXXXXXX 312
           +L+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ           
Sbjct: 9   ELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRR 68

Query: 313 XXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYK 492
                       YGKP + GV QLK  R+ +S+AEE            +SYW+ +DS+YK
Sbjct: 69  GGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYK 128

Query: 493 YFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGSQ 618
           Y+E+ILVDP+H A+R DP+INWI N VHKHRE+RGLTS G +
Sbjct: 129 YYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKK 170



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 633 GKGHXYSQTKGGSRRAAWLXRNTLQLRRKR 722
           GKGH   + +  SRRA W   N+L LRR R
Sbjct: 176 GKGHNNHKNRP-SRRATWKKNNSLSLRRYR 204


>At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast
           (ARA6) (THI1) (THI4) identical to SP|Q38814 Thiazole
           biosynthetic enzyme, chloroplast precursor (ARA6)
           {Arabidopsis thaliana}
          Length = 349

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -3

Query: 405 LKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDS--EYNITLFSTVA*SSGFVRPCG 232
           +K+   +   D +  G  + G ++NW L A   HT S  + N+     V  S G   P G
Sbjct: 179 VKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFG 238


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 463 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 564
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 818

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 133 KLYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRL 261
           KL  ++ S V RF   +  W Y+QLT+ +   R  R D   +L
Sbjct: 7   KLQEEEASSVTRFYNIILGWDYKQLTKENE--RKNRKDSKEKL 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,718,136
Number of Sequences: 28952
Number of extensions: 333795
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)