Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D03
         (861 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.8  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.1  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   4.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   5.4  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   9.5  

>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 536 LPADSRAXLVLAVAVGRSAIVALNIXAQRQSETVALVHKLNRVF 405
           LP DS   L L V +  S  V LN+ A++   T   V  +   F
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPLIGTYF 278


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 536 LPADSRAXLVLAVAVGRSAIVALNIXAQRQSETVALVHKLNRVF 405
           LP DS   L L V +  S  V LN+ A++   T   V  +   F
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPLIGTYF 278


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 536 LPADSRAXLVLAVAVGRSAIVALNIXAQ 453
           LP DS   L L V +  S  V LN+ A+
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAE 262


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 536 LPADSRAXLVLAVAVGRSAIVALNIXAQ 453
           LP DS   L L V +  S  V LN+ A+
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAE 262


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 536 LPADSRAXLVLAVAVGRSAIVALNIXAQ 453
           LP DS   L L V +  S  V LN+ A+
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAE 262


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 375 FPVEFRLIFAENAIKLMYKRDGLALTLS 458
           FP+++ L+F+E  + L++K   + + +S
Sbjct: 701 FPIDYSLVFSETKL-LLFKITSVMIAVS 727


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 618 ALTGTATIWPSES 656
           A+TGT T+ PS+S
Sbjct: 270 AMTGTKTVMPSQS 282


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +1

Query: 109 VILCLFVASLYAADSDVPNDI----LEEXLYNSVVVADY 213
           VILC F+ ++ AA++   N      +++ L N  V+ +Y
Sbjct: 7   VILCAFLVAVSAAENKYTNKYDNVDVDKILNNDRVLTNY 45


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,179
Number of Sequences: 336
Number of extensions: 2482
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)