Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D03
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.4  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    27   3.4  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   4.5  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.0  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   7.9  

>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 253 KKSEVITNVVNKLIXNNKMNCMEYAYQLWLQGL 351
           K+   +T+  NKL+ ++  +  +YAY L LQ L
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQQL 67


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 428 VHKLNRVFGEDKSELNWETIPDDV 357
           +H +     EDKS+L +ETIPD V
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPV 32


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +1

Query: 172 LEEXLYNSVVVADYDSAVEX--SKH--LYEEKKSEVITNVVNKLIXNNKMNCMEYAYQLW 339
           L E   +  V  D +S  E    KH  + + +KS + ++   K++  NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 373 VSQLSSDLSSPKTRLSLCTSATV 441
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +1

Query: 187 YNSVVVADYDSAVEXSKHLYEEKKSEVITNVVNKLIXNNK--MNCMEYAYQLWLQGLQGT 360
           +N      Y + +  +  +Y+    EVI  V+ +L  N +      E  YQ +++GL   
Sbjct: 71  FNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINEQDLETLYEKVYQSFVEGLDAN 130

Query: 361 SSGIVSQLSSDLSSPKTRLSL 423
            +GI +  +    S K  +SL
Sbjct: 131 DNGISAYPAGLKPSFKAAMSL 151


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 566 DLVVLPQSD*LPADSRAXLVLAVAVGRSAIVALNIXAQRQSETVA 432
           DLV+L   D +PAD R      + +  S +   N   ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,572
Number of Sequences: 5004
Number of extensions: 42491
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)