Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D03
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    31   0.75 
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    28   7.0  
At5g58860.1 68418.m07375 cytochrome P450 86A1 (CYP86) (CYP86A1) ...    28   9.2  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    28   9.2  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +1

Query: 79  LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEXLYNSVVVADYDSAVEXSKHLYEEKK 258
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +      E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 259 SEVITNV 279
             +  N+
Sbjct: 214 GSIAPNL 220


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 62   LGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSXFTIASSSPITTV 220
            LG    +T+Q    + +    +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1065 LGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At5g58860.1 68418.m07375 cytochrome P450 86A1 (CYP86) (CYP86A1) /
           CYPLXXXVI / P450-dependent fatty acid omega-hydroxylase
           identical to Cytochrome P450 86A1 (CYPLXXXVI)
           (P450-dependent fatty acid omega-hydroxylase)
           (SP:P48422) [Arabidopsis thaliana]
          Length = 513

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 79  LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEXLYNSVVVADYDSAVEXSKHLY-EEK 255
           +DA K  P+  +L  F+       + +P D+L+    N V+     S+V  S   +    
Sbjct: 262 IDARKNSPSDDLLSRFLKKRDVNGNVLPTDVLQRIALNFVLAGRDTSSVALSWFFWLVMN 321

Query: 256 KSEVITNVVNKL 291
             EV T +VN+L
Sbjct: 322 NREVETKIVNEL 333


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 189 VKXLLQNVVRDVGICSIQRCH 127
           +K  ++N+++  G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,252
Number of Sequences: 28952
Number of extensions: 232054
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)