Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D02
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           32   0.67 
03_06_0471 + 34169562-34169892,34170121-34170347                       31   0.88 
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    28   8.2  
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    28   8.2  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
 Frame = +1

Query: 145 PVRVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFK 315
           P    +  +    Y P  + P  V PP  Y P  +G  P     N + Y + P GRP   
Sbjct: 381 PPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSG 439

Query: 316 PTPFPGARG 342
           P P  GA G
Sbjct: 440 PPPSYGAGG 448


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +1

Query: 184 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 333
           Y P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 175 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 327
           G  Y+P   R     PP+   P    Y P   G  Y  +PQG+PY  P P+
Sbjct: 247 GETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291


>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 136 AQAPVRVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFK 315
           +QAP R   +   G+G    +N+ Y  N PK  +P  NG         Y   P G+P++ 
Sbjct: 102 SQAPNRT--HKFDGHGNPNKNNQAYHRNGPKRRSPAANGTPSYPAAMPYHQHP-GQPFYY 158

Query: 316 PT-PFP 330
           P  P P
Sbjct: 159 PVIPSP 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,312,329
Number of Sequences: 37544
Number of extensions: 310595
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)