Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D02
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    29   5.2  
At1g76010.1 68414.m08825 expressed protein                             28   6.9  
At1g72110.1 68414.m08335 expressed protein                             28   6.9  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   9.1  

>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
           protein ESTs gb|F20110 and gb|F20109 come from this
           gene; contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 624 FTNKAFFSLHFSCGLS 577
           + N+A F LHF+CGLS
Sbjct: 904 YVNRALFLLHFTCGLS 919


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 169 DSGNGYE-PIDNRPYIVNPPKDYNPNGNG-YE-PIDNGAYYVDRPQG-RPYFKPTPFPGA 336
           D G GY+ P ++R Y      D  P G G Y+ P   G Y  D PQG R Y  P   P  
Sbjct: 220 DGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRGGY--DGPQGRRGYDGP---PQG 274

Query: 337 RGG 345
           RGG
Sbjct: 275 RGG 277


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 418 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 323
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 220 PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFP 330
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,672,803
Number of Sequences: 28952
Number of extensions: 235458
Number of successful extensions: 514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)