Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D01
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683...   204   9e-53
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711...    43   4e-04
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400...    40   0.003
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536...    34   0.17 

>07_03_0405 -
           17767303-17767665,17767815-17768039,17768115-17768342,
           17768607-17768621,17768622-17768810,17769106-17769213,
           17769917-17770045
          Length = 418

 Score =  204 bits (497), Expect = 9e-53
 Identities = 101/170 (59%), Positives = 118/170 (69%), Gaps = 5/170 (2%)
 Frame = +2

Query: 278 FPAKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGXEGVNIICFQ 457
           F A  E  R PR+++VG+IQ+SIA+PT     +QKKAI  KVK +ID AG  GVNI+C Q
Sbjct: 83  FDADKEYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQ 142

Query: 458 -----ELWNMPFAFCTREKQPWCEFAESGEDGATTTFLRELAIXYAMVIVSSILXRDXXH 622
                E W MPFAFCTREK+ WCEFAE   DG +T FL++LA  Y MVIVS IL RD  H
Sbjct: 143 VSQLSEAWTMPFAFCTREKR-WCEFAEP-VDGESTQFLQQLAKKYNMVIVSPILERDVNH 200

Query: 623 SDILWNXXVVIXDXGNVIGKHRXXHIPXXGDFNXSXYYMEXNTGHPVFXT 772
            +I+WN  VVI + GN+IG HR  HIP  GDFN S YYME NTGHPVF T
Sbjct: 201 GEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFET 250


>02_04_0096 +
           19669428-19669525,19670770-19670818,19671041-19671132,
           19671235-19671386,19671478-19671524,19671617-19671650,
           19671769-19671935,19672070-19672166,19672239-19672408
          Length = 301

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 30/123 (24%), Positives = 55/123 (44%)
 Frame = +2

Query: 404 KKIIDVAGXEGVNIICFQELWNMPFAFCTREKQPWCEFAESGEDGATTTFLRELAIXYAM 583
           +++I  A  +G NI+  QEL+   + FC  ++  + + A+  +   T    ++LA    +
Sbjct: 32  ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90

Query: 584 VIVSSILXRDXXHSDILWNXXVVIXDXGNVIGKHRXXHIPXXGDFNXSXYYMEXNTGHPV 763
           VI  S        ++  +N   +I   G  +G +R  HIP    +    Y+   +TG   
Sbjct: 91  VIPVSFFEEA---NNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKA 147

Query: 764 FXT 772
           F T
Sbjct: 148 FKT 150


>03_01_0535 +
           4006284-4006418,4006483-4006599,4007363-4007587,
           4008112-4008205,4008587-4008661,4009045-4009123,
           4009385-4009400,4009441-4009584,4009822-4009904,
           4010012-4010093
          Length = 349

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
 Frame = +2

Query: 368 VNEQKKAIFNKVKKIIDVAGXEGVNIICFQELWNMPFAFCTREKQP-WCEFAESGEDGAT 544
           V   K     + ++ I+ A   G  ++   E+WN P++    +  P + E  E+G D A 
Sbjct: 55  VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS---NDSFPEYAEDIEAGGDAAP 111

Query: 545 T-TFLRELAIXYAMVIVSSILXRDXXHSDILWNXXVVIXDXGNVIGKHRXXHI 700
           + + + E+A    + +V   +     +   L+N   V    G + GKHR  H+
Sbjct: 112 SFSMMSEVARSLQITLVGGSISERSGNK--LYNTCCVFGSDGELKGKHRKIHL 162


>06_01_0729 +
           5367796-5368071,5368390-5368483,5368708-5368782,
           5368919-5368997,5369155-5369170,5369260-5369346,
           5369451-5369533,5369616-5369769
          Length = 287

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = +2

Query: 446 ICFQELWNMPFAFCTREKQPWCEFAESGEDGATTTFLRELAIXYAMVIVSSILXRDXXHS 625
           + FQE+WN P++    E  P       G    + + L E+A    + IV   +      S
Sbjct: 16  VLFQEIWNCPYSM---ETLPSHGEDIDGGASPSVSMLSEVAARRRITIVGGSIPE--RSS 70

Query: 626 DILWNXXVVIXDXGNVIGKHRXXHI 700
             L+N   VI   G +  KHR  H+
Sbjct: 71  GRLFNTCCVIGPDGQIKAKHRKLHL 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,353,722
Number of Sequences: 37544
Number of extensions: 269595
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)