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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D01
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)             35   0.074
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 33   0.22 
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)                    31   0.91 
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82)                   29   3.7  
SB_34309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                29   6.4  
SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43)                   28   8.5  
SB_59009| Best HMM Match : DEAD (HMM E-Value=0.87)                     28   8.5  
SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5)                    28   8.5  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     28   8.5  
SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1)                     28   8.5  

>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
          Length = 101

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQ 379
           A  E+ R PR+V++G +Q+ I  PT+ P+ +Q
Sbjct: 60  AAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQ 91


>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 31/129 (24%), Positives = 59/129 (45%)
 Frame = +2

Query: 314 IVKVGVIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGXEGVNIICFQELWNMPFAFCTR 493
           + ++G++Q  +AV  ++  N Q+     K+K+ +      G  I+   E +N P+     
Sbjct: 5   VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG---- 52

Query: 494 EKQPWCEFAESGEDGATTTFLRELAIXYAMVIVSSILXRDXXHSDILWNXXVVIXDXGNV 673
             Q + ++AE    G ++  L E+A      IV   +     +   L+N  +     GN+
Sbjct: 53  -TQYFKDYAEE-IPGESSNMLAEVAKETGAYIVGGSIPERASNRK-LYNTSLSYDPSGNL 109

Query: 674 IGKHRXXHI 700
           +GKHR  H+
Sbjct: 110 MGKHRKIHL 118


>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
          Length = 949

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421
           A D +  P   VK     H + +PT++P+ E + + +++K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808


>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 31/128 (24%), Positives = 58/128 (45%)
 Frame = +2

Query: 305 PPRIVKVGVIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGXEGVNIICFQELWNMPFAF 484
           P  + ++G++Q  +AV  ++  N Q+     K+K+ +      G  I+   E +N P+  
Sbjct: 4   PILVFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG- 54

Query: 485 CTREKQPWCEFAESGEDGATTTFLRELAIXYAMVIVSSILXRDXXHSDILWNXXVVIXDX 664
                Q + ++AE    G ++  L E+A      IV   +     +   L+N  +     
Sbjct: 55  ----TQYFKDYAEE-IPGESSNMLAEVAKETGAYIVGGSIPERASNGK-LYNTSLSYDPS 108

Query: 665 GNVIGKHR 688
           GN++GKHR
Sbjct: 109 GNLMGKHR 116


>SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1206

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421
           AKD +  P   VK     H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 823 AKDHRNNPRLAVKAQTYHHYLCIPAEKPIEEWRPSELGHKLDRLAEV 869


>SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82)
          Length = 250

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421
           A D +  P   VK     H + +PT++P+ E + + + +K+ ++ +V
Sbjct: 177 AHDHRNNPRLAVKAQTYHHYLCIPTEKPIEEWRPSELGHKLDRLAEV 223


>SB_34309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 638 SKVCPNAXRPFXIXRTRSPLRTXWRVPEGRSWSPRLHLIRQTRTTAASPLC 486
           ++VCPN  R   +  T+    T   + +GRS SP    + +T+ +     C
Sbjct: 188 AEVCPNGPREQSLVTTKQEFETPMFIYDGRSISPTTCEVVETKDSFYGMCC 238


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 558 RRKVVVAPSSPDSANSHHGCFSLVQNAKGIFHNSWK 451
           +R   V+   PD+  +HH   SL+ + KG+ H + K
Sbjct: 458 KRDTRVSTRPPDTRVTHHAITSLMYHVKGVTHYAMK 493


>SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43)
          Length = 802

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421
           A D +  P  +VK     H + +P ++P+ E + + + +K+  + +V
Sbjct: 653 AHDHRNNPRLVVKAQTYHHYLCIPAEKPIEEWRPSELAHKLDHLAEV 699


>SB_59009| Best HMM Match : DEAD (HMM E-Value=0.87)
          Length = 957

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421
           A D +  P  +VK     H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 542 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 588


>SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5)
          Length = 773

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421
           A D +  P  +VK     H + +P ++P+ E + + + +K+  + +V
Sbjct: 624 AHDHRNNPRLVVKAQTYHHYLCIPAEKPIEEWRPSELAHKLDHLAEV 670


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421
           A D +  P  +VK     H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 686 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 732


>SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1115

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421
           A D +  P  +VK     H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 749 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 795


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,117,754
Number of Sequences: 59808
Number of extensions: 296537
Number of successful extensions: 724
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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