BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP04_F_D01 (858 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2) 35 0.074 SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 33 0.22 SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) 31 0.91 SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91 SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8 SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82) 29 3.7 SB_34309| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4 SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 6.4 SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43) 28 8.5 SB_59009| Best HMM Match : DEAD (HMM E-Value=0.87) 28 8.5 SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5) 28 8.5 SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 8.5 SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1) 28 8.5 >SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2) Length = 101 Score = 35.1 bits (77), Expect = 0.074 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = +2 Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQ 379 A E+ R PR+V++G +Q+ I PT+ P+ +Q Sbjct: 60 AAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQ 91 >SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) Length = 242 Score = 33.5 bits (73), Expect = 0.22 Identities = 31/129 (24%), Positives = 59/129 (45%) Frame = +2 Query: 314 IVKVGVIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGXEGVNIICFQELWNMPFAFCTR 493 + ++G++Q +AV ++ N Q+ K+K+ + G I+ E +N P+ Sbjct: 5 VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG---- 52 Query: 494 EKQPWCEFAESGEDGATTTFLRELAIXYAMVIVSSILXRDXXHSDILWNXXVVIXDXGNV 673 Q + ++AE G ++ L E+A IV + + L+N + GN+ Sbjct: 53 -TQYFKDYAEE-IPGESSNMLAEVAKETGAYIVGGSIPERASNRK-LYNTSLSYDPSGNL 109 Query: 674 IGKHRXXHI 700 +GKHR H+ Sbjct: 110 MGKHRKIHL 118 >SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) Length = 949 Score = 31.5 bits (68), Expect = 0.91 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = +2 Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421 A D + P VK H + +PT++P+ E + + +++K+ ++ +V Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808 >SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 117 Score = 31.5 bits (68), Expect = 0.91 Identities = 31/128 (24%), Positives = 58/128 (45%) Frame = +2 Query: 305 PPRIVKVGVIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGXEGVNIICFQELWNMPFAF 484 P + ++G++Q +AV ++ N Q+ K+K+ + G I+ E +N P+ Sbjct: 4 PILVFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG- 54 Query: 485 CTREKQPWCEFAESGEDGATTTFLRELAIXYAMVIVSSILXRDXXHSDILWNXXVVIXDX 664 Q + ++AE G ++ L E+A IV + + L+N + Sbjct: 55 ----TQYFKDYAEE-IPGESSNMLAEVAKETGAYIVGGSIPERASNGK-LYNTSLSYDPS 108 Query: 665 GNVIGKHR 688 GN++GKHR Sbjct: 109 GNLMGKHR 116 >SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1206 Score = 29.9 bits (64), Expect = 2.8 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +2 Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421 AKD + P VK H + +P ++P+ E + + + +K+ ++ +V Sbjct: 823 AKDHRNNPRLAVKAQTYHHYLCIPAEKPIEEWRPSELGHKLDRLAEV 869 >SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82) Length = 250 Score = 29.5 bits (63), Expect = 3.7 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +2 Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421 A D + P VK H + +PT++P+ E + + + +K+ ++ +V Sbjct: 177 AHDHRNNPRLAVKAQTYHHYLCIPTEKPIEEWRPSELGHKLDRLAEV 223 >SB_34309| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 445 Score = 28.7 bits (61), Expect = 6.4 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = -2 Query: 638 SKVCPNAXRPFXIXRTRSPLRTXWRVPEGRSWSPRLHLIRQTRTTAASPLC 486 ++VCPN R + T+ T + +GRS SP + +T+ + C Sbjct: 188 AEVCPNGPREQSLVTTKQEFETPMFIYDGRSISPTTCEVVETKDSFYGMCC 238 >SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) Length = 1021 Score = 28.7 bits (61), Expect = 6.4 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 558 RRKVVVAPSSPDSANSHHGCFSLVQNAKGIFHNSWK 451 +R V+ PD+ +HH SL+ + KG+ H + K Sbjct: 458 KRDTRVSTRPPDTRVTHHAITSLMYHVKGVTHYAMK 493 >SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43) Length = 802 Score = 28.3 bits (60), Expect = 8.5 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +2 Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421 A D + P +VK H + +P ++P+ E + + + +K+ + +V Sbjct: 653 AHDHRNNPRLVVKAQTYHHYLCIPAEKPIEEWRPSELAHKLDHLAEV 699 >SB_59009| Best HMM Match : DEAD (HMM E-Value=0.87) Length = 957 Score = 28.3 bits (60), Expect = 8.5 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +2 Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421 A D + P +VK H + +P ++P+ E + + + +K+ ++ +V Sbjct: 542 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 588 >SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5) Length = 773 Score = 28.3 bits (60), Expect = 8.5 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +2 Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421 A D + P +VK H + +P ++P+ E + + + +K+ + +V Sbjct: 624 AHDHRNNPRLVVKAQTYHHYLCIPAEKPIEEWRPSELAHKLDHLAEV 670 >SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) Length = 1101 Score = 28.3 bits (60), Expect = 8.5 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +2 Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421 A D + P +VK H + +P ++P+ E + + + +K+ ++ +V Sbjct: 686 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 732 >SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1) Length = 1115 Score = 28.3 bits (60), Expect = 8.5 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = +2 Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 421 A D + P +VK H + +P ++P+ E + + + +K+ ++ +V Sbjct: 749 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 795 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,117,754 Number of Sequences: 59808 Number of extensions: 296537 Number of successful extensions: 724 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 690 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 724 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2443309836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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