Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_D01
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   181   5e-46
Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical pr...    29   5.6  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  181 bits (441), Expect = 5e-46
 Identities = 87/163 (53%), Positives = 105/163 (64%)
 Frame = +2

Query: 284 AKDEQTRPPRIVKVGVIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGXEGVNIICFQEL 463
           A+ EQTR PR+V+V  IQ+ I  PT   V EQ+ AI  +V  +I+ A   G N+I  QE 
Sbjct: 63  AQKEQTRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEA 122

Query: 464 WNMPFAFCTREKQPWCEFAESGEDGATTTFLRELAIXYAMVIVSSILXRDXXHSDILWNX 643
           W MPFAFCTRE+ PW EFAES   G TT FL +LA+ + +VI+S IL RD    D++WN 
Sbjct: 123 WTMPFAFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNT 182

Query: 644 XVVIXDXGNVIGKHRXXHIPXXGDFNXSXYYMEXNTGHPVFXT 772
            VVI   G VIG+ R  HIP  GDFN S YYME   GHPVF T
Sbjct: 183 AVVISHTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFET 225


>Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical
           protein C34E7.3 protein.
          Length = 256

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 561 SRRKVVVAPSSPDSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSXPATS 415
           SR K+    +S    +  HG + +V+ AK  F + +++  +TPS P T+
Sbjct: 197 SRMKIRKDSNSSKKEDMEHGDWWIVRVAKMGFESCFQRRRITPSPPPTN 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,582
Number of Sequences: 27780
Number of extensions: 211426
Number of successful extensions: 479
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)