Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C23
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           33   0.40 
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232           29   4.9  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   6.5  
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610...    28   8.6  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 281 RKRHASRREKGGQVSGKRQGRXQESARGSFQGETPG 174
           R R   RR  GG+V+G+   R +   RG+++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
          Length = 1035

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 34/115 (29%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
 Frame = +2

Query: 92  HRLRPPDEHH----KNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPXSDPAAYRIPVR--- 250
           HR R  D H     + R    R R+P    R ++ PP     R     P  Y +P     
Sbjct: 153 HRDRDRDRHAAGRPRGRGDDDRDRDPP---RGRSPPPYRGDDRGRYDGPPDYMLPDHPSS 209

Query: 251 LSPFGKRGAF---S*LTL*VSQFGVGRSLQAGLCARTPRFSPTAAPYPVTIVLSP 406
           L P  K G F     +TL V    +GR+    L  R+P   P   P PV +   P
Sbjct: 210 LRPARKDGEFFGEPGMTLRVCSTEMGRTSSLYLDRRSPPLPPRPPPPPVRVASPP 264


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 558 QQSADTKYXSSSVAVVRPPLQELCSTAYIPRSA 460
           Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = -1

Query: 657 RNLLLANKKTTATSGGLXAGSRATNSFSEGNWLQQSADTKYXSSSVAVVRPPLQELCSTA 478
           RN + AN    A+S    A     N  S       S      SSSVA   PP + L ST 
Sbjct: 206 RNSITAN---LASSSVAAASPPPRNLVSTTPVPHNSIAANLASSSVAAASPPPRNLVSTT 262

Query: 477 YIPRSANPVTS 445
            +PR  NP+ +
Sbjct: 263 PVPR--NPIAA 271


>10_02_0167 -
           6100676-6102111,6102174-6102708,6102967-6103975,
           6104006-6105036
          Length = 1336

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 295 QREL*ESATLPEGRKAD-RYPVSGRVGXRRAHEGASRGKRLVS 170
           QREL   AT P     D R  ++GR   RR  + A+R +R VS
Sbjct: 32  QRELPRQATPPPRGTGDLRDQINGRRKARRTRDDANRSRRHVS 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,035,780
Number of Sequences: 37544
Number of extensions: 487075
Number of successful extensions: 1374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)