Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C22
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   134   2e-32
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   134   2e-32
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    27   4.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   6.2  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  134 bits (323), Expect = 2e-32
 Identities = 63/107 (58%), Positives = 83/107 (77%)
 Frame = +2

Query: 176 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 355
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 356 QLTVQNRXAQIAVVPSGSSPYHQSP*GASPVTVKSRKISKHNGNISL 496
           +LT+QNR A ++VVPS S+   ++    +    K + ++ H+GN+SL
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVA-HSGNVSL 106



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = +3

Query: 495 LEDVVGIAKIMRNRSXGPGTFLASVKEILGTAQSVGCTV 611
           L++++ +A+ MR +S        +VKEILGTA SVGCTV
Sbjct: 106 LDEIIEVARTMRFKSLAK-ELSGTVKEILGTAFSVGCTV 143


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  134 bits (323), Expect = 2e-32
 Identities = 63/107 (58%), Positives = 83/107 (77%)
 Frame = +2

Query: 176 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 355
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 356 QLTVQNRXAQIAVVPSGSSPYHQSP*GASPVTVKSRKISKHNGNISL 496
           +LT+QNR A ++VVPS S+   ++    +    K + ++ H+GN+SL
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVA-HSGNVSL 106



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = +3

Query: 495 LEDVVGIAKIMRNRSXGPGTFLASVKEILGTAQSVGCTV 611
           L++++ +A+ MR +S        +VKEILGTA SVGCTV
Sbjct: 106 LDEIIEVARTMRFKSLAK-ELSGTVKEILGTAFSVGCTV 143


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 523 IFAMPTTSSKGDVAVVF*YFSAFYGHRGGSLRALMIRAAARGNNSYL 383
           +F  PT+SSK D  V     S+F+ + G  + AL +  +  GN   L
Sbjct: 480 VFYNPTSSSKNDAFVA---HSSFFANEGDIITALNVFESFVGNKKDL 523


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -3

Query: 152 LYYNNVKSKWMSLDSARATA*TFRDVGSSL*KEKQKIKILRIPYSE 15
           L+ N +  +W SL+ +   +   +D  S+     +   IL++PY++
Sbjct: 189 LFSNEIPQEWCSLELSYYKSSPSKDFSSASQPNSEGFSILKLPYNK 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,249
Number of Sequences: 5004
Number of extensions: 59675
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)