Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_C22
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 123 2e-28
02_05_0416 + 28791512-28792012 123 2e-28
04_01_0472 - 6144655-6145182,6145204-6145881,6149337-6149765,614... 30 2.8
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 29 3.8
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499... 29 3.8
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 29 5.0
07_02_0020 - 11897013-11897168,11897521-11897637,11898141-118981... 29 6.6
>04_04_1026 + 30214437-30214937
Length = 166
Score = 123 bits (296), Expect = 2e-28
Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Frame = +2
Query: 176 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 352
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 353 VQLTVQNRXAQIAVVPSGSSPYHQSP*GASPVTVKSRKISKHNGNISL 496
V+LTVQNR A+++VVPS ++ ++ K + I KH+GNISL
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNI-KHSGNISL 107
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = +3
Query: 495 LEDVVGIAKIMRNRSXGPGTFLASVKEILGTAQSVGCTV 611
L+DV+ IA+IMRNRS +VKEILGT SVGCTV
Sbjct: 107 LDDVIEIARIMRNRSMAK-EMAGTVKEILGTCVSVGCTV 144
>02_05_0416 + 28791512-28792012
Length = 166
Score = 123 bits (296), Expect = 2e-28
Identities = 63/108 (58%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Frame = +2
Query: 176 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 352
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 353 VQLTVQNRXAQIAVVPSGSSPYHQSP*GASPVTVKSRKISKHNGNISL 496
V+LTVQNR A+++VVPS ++ ++ K + I KH+GNISL
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNI-KHSGNISL 107
Score = 42.7 bits (96), Expect = 4e-04
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +3
Query: 495 LEDVVGIAKIMRNRSXGPGTFLASVKEILGTAQSVGCTV 611
L+DV+ IA++MR RS +VKEILGT SVGCTV
Sbjct: 107 LDDVIEIARVMRPRSMAK-EMAGTVKEILGTCVSVGCTV 144
>04_01_0472 -
6144655-6145182,6145204-6145881,6149337-6149765,
6149930-6150123,6150222-6150261
Length = 622
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 556 KVPGPXDLFLMIFAMPTTSSKGDVAVV 476
K+PGP + ++ P+ +SKGD+AV+
Sbjct: 121 KIPGPVGVIVVKGLQPSAASKGDLAVI 147
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 556 KVPGPXDLFLMIFAMPTTSSKGDVAVV 476
K+PGP + ++ P+ +SKGD+A++
Sbjct: 283 KIPGPAGVIVVKGLQPSATSKGDLAII 309
>10_02_0078 -
4992019-4992594,4993156-4993248,4995984-4996202,
4996282-4996345,4996429-4996485,4996573-4996671,
4997296-4997327
Length = 379
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 406 QQPLSSEPLRSLPGDRKKQKNIKTQRQHLPWKM*SALRRS 525
QQ +P +SLP ++KQ + Q+Q +P + + LRR+
Sbjct: 197 QQAQPQQPKQSLPQQQQKQSLPQQQQQQMPHEKPTTLRRA 236
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 29.1 bits (62), Expect = 5.0
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Frame = +2
Query: 227 VGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRXAQIAVVP-- 400
+GG G+ +LA G PK D K+ SD + L V + P
Sbjct: 98 MGGGPGSWPALAESAAARGSWPKSASSDSLKSLSDGSAPSASEDLIVPSVQPHPVANPIS 157
Query: 401 SGSSPYHQSP*GASPVTVKSRKISKHNGNISLGRCSRH 514
GS+P P + V V S+ NGN RH
Sbjct: 158 GGSNPTSSPPPPNATVVV----TSEQNGNTDQSNPVRH 191
>07_02_0020 -
11897013-11897168,11897521-11897637,11898141-11898197,
11898278-11898370,11898452-11898571,11898774-11898890,
11899254-11899349,11899445-11899594,11899932-11900086,
11901047-11901257
Length = 423
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 634 DHVAACXPTVHPTDCAVPRISFTEARKV 551
D V C P +HP VP ++F EA ++
Sbjct: 210 DGVLTCDPNIHPNAKPVPYLTFDEAAEL 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,539,158
Number of Sequences: 37544
Number of extensions: 435990
Number of successful extensions: 1057
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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