Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C22
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             150   1e-36
SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)                   32   0.71 
SB_49666| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_59798| Best HMM Match : Somatomedin_B (HMM E-Value=5.2)             29   3.8  
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     29   6.6  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  150 bits (364), Expect = 1e-36
 Identities = 76/107 (71%), Positives = 85/107 (79%)
 Frame = +2

Query: 176 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 355
           MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DWKGLKITV
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60

Query: 356 QLTVQNRXAQIAVVPSGSSPYHQSP*GASPVTVKSRKISKHNGNISL 496
            LT+QNR A+++VVPS SS   ++     P   K  K  KHNGNI+L
Sbjct: 61  CLTIQNRQAKVSVVPSASSLIIKAL-KEPPRDRKKVKNIKHNGNITL 106



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 24/43 (55%), Positives = 28/43 (65%)
 Frame = +3

Query: 495 LEDVVGIAKIMRNRSXGPGTFLASVKEILGTAQSVGCTVGXQA 623
           L+DV  +AK+MR RS        +VKEILGT QSVGCTV   A
Sbjct: 106 LDDVTNVAKVMRPRSMARH-LSGTVKEILGTCQSVGCTVDGMA 147


>SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)
          Length = 386

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 248 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRXAQIAVVPSGSSPY 418
           T  L P ++ PLGL PKK+  D  +    S  KGL +   +++++   + A +    S  
Sbjct: 263 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 322

Query: 419 HQSP*GASPVTVKSRKI 469
             +  G SP+ +  +K+
Sbjct: 323 RAAGRGVSPLGLVPKKL 339


>SB_49666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 574 RFLAQHSQL-DVLWXGRPPHDLIDDIXSGALTL**IIVSXI 693
           R + + S L DV+W   P HD+IDD+   +  L  I++  I
Sbjct: 18  RNIIRRSNLADVMWVSPPRHDVIDDVIKNSCKLYVILIELI 58


>SB_59798| Best HMM Match : Somatomedin_B (HMM E-Value=5.2)
          Length = 198

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 361 DSSKQTSPDSCCSLWQQPLSSEPLRS 438
           DSS +TS DS   +W++P++ E  +S
Sbjct: 155 DSSYETSVDSMTDIWEEPMAKEAEKS 180


>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = -1

Query: 562 ARKVPGPXDLFLMIFAMPTTSSKGDVAVVF*YFSAFYGHRGGSLRALMIR-----AAARG 398
           A K PGP  +  +IF M T      VA ++   S   GH  G L++  +R     +  + 
Sbjct: 448 ANKAPGPDGIPALIFKMFTFELSPIVAELY-NTSLKEGHLPGLLKSANVRPMPKLSPPKS 506

Query: 397 NNSYLGXSVLNCQLHSDLETLPVTCGLGNVITHLFRRQ 284
             + +    L C L   +E   ++  L  ++ HL  +Q
Sbjct: 507 IETDIRPISLTCHLAKAMEGFTLSRSLPGIVQHLDTKQ 544


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 236  EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRXAQIAVVPS 403
            E+G T +    +  LG  PK V +D     +DW    +       +    IA+ PS
Sbjct: 1793 ELGITDAEGNYVDSLGADPKAVSNDYVGYATDWVNNNLPENAITNSTWTGIALGPS 1848


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,057,743
Number of Sequences: 59808
Number of extensions: 475850
Number of successful extensions: 1170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)