Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C22
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   143   1e-34
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    35   0.067
AC087794-9|AAY86292.1|   94|Caenorhabditis elegans Hypothetical ...    29   3.3  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  143 bits (347), Expect = 1e-34
 Identities = 70/107 (65%), Positives = 84/107 (78%)
 Frame = +2

Query: 176 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 355
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 356 QLTVQNRXAQIAVVPSGSSPYHQSP*GASPVTVKSRKISKHNGNISL 496
           +LT+QNR A+I VVPS +S   +      P   K  K  KHNG++++
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKEL-KEPPRDRKKVKNVKHNGDLTV 106



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 22/42 (52%), Positives = 29/42 (69%)
 Frame = +3

Query: 495 LEDVVGIAKIMRNRSXGPGTFLASVKEILGTAQSVGCTVGXQ 620
           ++ ++ IA+IMR RS        +VKEILGTAQSVGCT+  Q
Sbjct: 106 VDTIIKIARIMRPRSMAK-KLEGTVKEILGTAQSVGCTIDGQ 146


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 35.1 bits (77), Expect = 0.067
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +3

Query: 564 SVKEILGTAQSVGCTVGXQ 620
           +VKEILGTAQSVGCT+  Q
Sbjct: 13  TVKEILGTAQSVGCTIDGQ 31


>AC087794-9|AAY86292.1|   94|Caenorhabditis elegans Hypothetical
           protein Y32G9A.13 protein.
          Length = 94

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 446 VTVKSRKISKHNGNISLGRCSRHCEDHE 529
           V +K RK S+ NGNI +  CS+  + +E
Sbjct: 67  VPIKRRKSSEENGNIQMKTCSKKAQFNE 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,976,502
Number of Sequences: 27780
Number of extensions: 353651
Number of successful extensions: 852
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)