Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_C22
(886 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 121 6e-28
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 121 6e-28
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 121 6e-28
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 29 3.1
At2g47860.2 68415.m05974 phototropic-responsive NPH3 family prot... 29 3.1
At2g47860.1 68415.m05973 phototropic-responsive NPH3 family prot... 29 3.1
At3g28450.1 68416.m03554 leucine-rich repeat transmembrane prote... 29 5.4
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 121 bits (292), Expect = 6e-28
Identities = 62/107 (57%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Frame = +2
Query: 176 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 352
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 353 VQLTVQNRXAQIAVVPSGSSPYHQSP*GASPVTVKSRKISKHNGNIS 493
V+LTVQNR A++ VVPS ++ ++ K + I KHNGNIS
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNI-KHNGNIS 106
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = +3
Query: 498 EDVVGIAKIMRNRSXGPGTFLASVKEILGTAQSVGCTV 611
+DV+ IAKIMR RS +VKEILGT SVGCTV
Sbjct: 108 DDVIEIAKIMRPRSIAK-ELSGTVKEILGTCVSVGCTV 144
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 121 bits (292), Expect = 6e-28
Identities = 62/107 (57%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Frame = +2
Query: 176 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 352
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 353 VQLTVQNRXAQIAVVPSGSSPYHQSP*GASPVTVKSRKISKHNGNIS 493
V+LTVQNR A++ VVPS ++ ++ K + I KHNGNIS
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNI-KHNGNIS 106
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/38 (55%), Positives = 25/38 (65%)
Frame = +3
Query: 498 EDVVGIAKIMRNRSXGPGTFLASVKEILGTAQSVGCTV 611
+DV IA+IMR RS +V+EILGT SVGCTV
Sbjct: 108 DDVTEIARIMRPRSIAK-ELSGTVREILGTCVSVGCTV 144
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 121 bits (292), Expect = 6e-28
Identities = 62/107 (57%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Frame = +2
Query: 176 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 352
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 353 VQLTVQNRXAQIAVVPSGSSPYHQSP*GASPVTVKSRKISKHNGNIS 493
V+LTVQNR A++ VVPS ++ ++ K + I KHNGNIS
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNI-KHNGNIS 106
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/38 (55%), Positives = 25/38 (65%)
Frame = +3
Query: 498 EDVVGIAKIMRNRSXGPGTFLASVKEILGTAQSVGCTV 611
+DV IA+IMR RS +V+EILGT SVGCTV
Sbjct: 108 DDVTEIARIMRPRSIAK-ELSGTVREILGTCVSVGCTV 144
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +2
Query: 227 VGG--EVGATSSLAPKIGPLGLSPKKV---GDDIAKATSDWK-GLKITVQLTVQNRXAQI 388
+GG + GA+ P +GP G+SP + G+D + K L I+ + + +
Sbjct: 985 IGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPL 1044
Query: 389 AVVPSGSSPYHQSP*GASPV 448
V P G P SP G P+
Sbjct: 1045 GVGPPGVGPVIASPPGEGPL 1064
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 227 VGG--EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGL-KITVQLTVQNRXAQIAVV 397
+GG + GA+ P +GP G+SP + D ++ SD K+ + ++ ++ V
Sbjct: 870 IGGPPDEGASDGGPPDVGPFGISPPII-DPPGESESDGDPAGKLPLDISPLSKGPS-CVS 927
Query: 398 PSGSSPYHQSP*GASPV 448
P G P SP G P+
Sbjct: 928 PLGVGPVIASPPGEGPL 944
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +2
Query: 272 GPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRXAQIAVVPSGSSPYHQSP*GASPVT 451
GPLG+SP + +A A+ + K+ L+ + + P SP + P G P+
Sbjct: 652 GPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSS-GEGPLVESPPSEGPLGVDPLG 710
Query: 452 VKSRKIS 472
S IS
Sbjct: 711 AGSLGIS 717
>At2g47860.2 68415.m05974 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 517
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 495 LEDVVGIAKIMRNRSXGPGTFLAS-VKEILGTAQSVGC 605
LE VVG+ N+S P +FL+S +K +G+ SV C
Sbjct: 154 LEAVVGLLPTQANKSSIPISFLSSLLKTAIGSGTSVSC 191
>At2g47860.1 68415.m05973 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 635
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 495 LEDVVGIAKIMRNRSXGPGTFLAS-VKEILGTAQSVGC 605
LE VVG+ N+S P +FL+S +K +G+ SV C
Sbjct: 272 LEAVVGLLPTQANKSSIPISFLSSLLKTAIGSGTSVSC 309
>At3g28450.1 68416.m03554 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAD02501
from [Arabidopsis thaliana]
Length = 605
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -2
Query: 498 PREMLPLCFDIFLLF 454
PR++LPLCF IFL F
Sbjct: 8 PRKLLPLCFIIFLCF 22
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,109,332
Number of Sequences: 28952
Number of extensions: 334901
Number of successful extensions: 823
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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