Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C21
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0598 - 25391923-25393197                                         29   4.8  
06_03_0915 - 25929433-25930893                                         29   4.8  

>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 320 LRGPSPRADLTSSLPLSPGARGWEVKNILD 409
           L GPS  +D+ S L   PG+  W++  +LD
Sbjct: 42  LEGPSRSSDILSLLDSLPGSDQWQLLKVLD 71


>06_03_0915 - 25929433-25930893
          Length = 486

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 2/124 (1%)
 Frame = -2

Query: 623 GGGGPXXSRNXIXXG-SXXPSXKGDPAAAGLXXXXXXXXGX*ALQYXLFIYSVDINSXEI 447
           GGGG       I  G +  P   G PAA           G  AL   + +  V +    I
Sbjct: 52  GGGGENDDLPLIGDGPAGPPEGSGVPAAVFNLATSIIGAGIMALPATMKVLGVAVGLVSI 111

Query: 446 *NIWLIHYXVINCL-RYSLLPTREHQGKGVGLK*GRPLGTVHVICTVVDRFVAVSIRVVV 270
             + ++    I  L R+++       G+ V    GRP   V  +C +++    + + +++
Sbjct: 112 LVMGILSEVTIELLVRFAVYCRALSYGEVVHKALGRPASIVAQMCVIINNAGVLIVYLII 171

Query: 269 FGRI 258
            G +
Sbjct: 172 IGDV 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,887,144
Number of Sequences: 37544
Number of extensions: 373924
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)