Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C21
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    29   4.0  
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ...    29   5.3  
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ...    29   5.3  
At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta...    28   9.2  

>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +3

Query: 135 LWPTLKTPVRVVENADSADPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNG 314
           +W T    ++V+  AD  D    +PT+  GY  +    +  NPP DY    N +  I  G
Sbjct: 418 IWDTAFV-LQVMLAADVDDEI--RPTLIKGYSYLRKSQFTENPPGDYI---NMFRDISKG 471

Query: 315 AY-YVDRPQG 341
            + Y D+ QG
Sbjct: 472 GWGYSDKDQG 481


>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -3

Query: 253 MYGRLSIGS*PFPTVGWAKNGSAESAFSTTLTGVLSVGHSQQSEDENHEEFH 98
           ++G  +  S P  +  W+ + +    FST +   +   H  Q++  +H  FH
Sbjct: 468 LWGSPNARSEPSSSSVWSTSSTGNPLFSTRVDRSVPFPHQHQNQSRSHHHFH 519


>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -3

Query: 253 MYGRLSIGS*PFPTVGWAKNGSAESAFSTTLTGVLSVGHSQQSEDENHEEFH 98
           ++G  +  S P  +  W+ + +    FST +   +   H  Q++  +H  FH
Sbjct: 468 LWGSPNARSEPSSSSVWSTSSTGNPLFSTRVDRSVPFPHQHQNQSRSHHHFH 519


>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
           branching enzyme class II (SBE2-1) nearly identical to
           starch branching enzyme class II [Arabidopsis thaliana]
           GI:619939
          Length = 858

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 249 YIVNPPKDYNPNGNGYEP--IDNGAYYVDRPQGPTLLQAY 362
           Y V PP +   NG  Y+P   D  A+   RP+ PT L+ Y
Sbjct: 290 YSVQPPGEIPYNGVYYDPPEEDKYAFKHPRPKKPTSLRIY 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,138,571
Number of Sequences: 28952
Number of extensions: 273405
Number of successful extensions: 558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)